Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Caldisphaera lagunensis DSM 15908

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
8323	CTTTTACTTCCTCTTTGGCTTCCTCTTTTACTTCCT	Design primers
28812	TGAATATCCATAATTATCCATGAATTTCAA	Design primers
53736	AATATAAATACTATAAATAATATAAAT	Design primers
66313	ATTAAATATTAATAAAAAATTAATTTAATTTTA	Design primers
138326	AAAAAAAAAAAAGAAAAAAAAGAAA	Design primers
142008	GTTGTTGTAGTTGTGGTTGATGTT	Design primers
221940	TA-TA-TA-TA-AA-TA-TA-CA-TA-CA-TA-TA	Design primers
303899	TTGATTTCATTTTATTTGTTTTGGT	Design primers
306337	TAAAATAATATTAAATTAAATAATATAATA	Design primers
370423	TGGATGTAGTTGTTGTTGTAGTTGTTGAGGTAGTTGTGGTTGTAGTTA	Design primers
414163	AAATATAAAAATAAATAAAACTAT	Design primers
427613	TTTCTTCCTCGCTTT-CTTCTTCCTCGCTTT-CTTCTTCCTCGAATT	Design primers
451357	TTATTTTATATTATTTCATTTAATT	Design primers
532652	ATAAAATTTTATAAAAATTTATCAAATTAT	Design primers
584185	ATAAAAGGCAAAAAGAAATAGAAGAATTGCAAAAAGAAATAGAAGAATTGCAAAAAGAAATAG	Design primers
625987	TTAAT-TTAAT-TTTAT-CTAAT-TTAAT	Design primers
678960	TTCTTT-TTCTTT-CTCTTT-TTCTTC	Design primers
744760	TTATAATTAAAATTTTAATTATAA	Design primers
750408	TTTCATTTGAATTCATTTCGTTCCA	Design primers
769296	TTAATTTAATATAAATTTAATATAAACTTAATA	Design primers
868708	AAATTTATAAATTAATAAAATTATAATTTTAT	Design primers
924873	ACTTTTAAAAATTTTTAAAATCTTTTATAA	Design primers
926643	AAATTTAATAAATTTTATAAATTAAAT	Design primers
929864	AATTATTATAATTAATATAATTTTTAT	Design primers
931979	TTTATTTTTTTTATCTTTTTTATTATTTTCATTTTT	Design primers
979961	TAATATTTTTTTAATTTTTATTAAATATTTTTT	Design primers
1017535	CTACTACTACAACTCCTACTACTA	Design primers
1076663	TGTTGTTGTTGATGTGGTTGATGTTGTGGTTGATGTTGTGGT	Design primers
1076706	GTTGATGGAGTTGTGGTTGATGTTGTGGTGGTTGATGGAGTTGTG	Design primers
1076760	GTTGATGTTGTGGTTGATGTTGTGGTGGTTGATGGAGTTGTGGTT	Design primers
1088138	TGAGCTAAGTGATGAGACTGTGGAACTTAATGATGAGACTGTTGTACTTAGGGATGAGACTGTGGAACTTAATGATGAGACTGTTGTACTTAGGGATGAGACTGT	Design primers
1138002	TTTTATAAAAATATGATAAAAATATGATAAAAATATGATAAAAA	Design primers
1241799	AATAATATAAAATCAAAAAAATTAA	Design primers
1345023	AGGACATGAGCA-TGAACATGAGCA-TGAACATGAGCA-TGAACATGAGCA	Design primers
1364060	TTATAAAAAATTATAAAATGATATAAAACA	Design primers
1376566	AAATTATTTTAAATAATTATTAATTATTTT	Design primers
1418085	TCTAATAATAGGTTTAATTATAGGTCTAGTAATAGG	Design primers
1419263	ATTTTTTCTTTGTTTTTCTTATTGTTTTTT	Design primers
1472325	CTT-CAT-CAT-CAT-CTT-CAT-CAT-CAT	Design primers
1489457	TAGGTGGTGTAGTAATAGGTGTTATAATAATAGGTGCTATAGCAA	Design primers
1504010	AATTTTAAAAATTTAAAATTTTAA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

8323

CTTTTACTTCCTCTTTGGCTTCCTCTTTTACTTCCT