Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Desulfosporosinus orientis DSM 765

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
210893	TATAATTTTAAAATTTTAAAATTT	Design primers
293283	GGCAGTGGCAGGAGCAGTGGCAGA	Design primers
317346	GGGGCCACAGGAGCCACAGGAGCCACA	Design primers
317382	GGAGCAACGGGAGCAACCGGGGCAACG	Design primers
317412	GCCACAGGAGCCACAGGTGCAACAGGA	Design primers
317471	AGGAGCCACAGGTGCAACAGGAGCAACGGGAGCAACAGGAGCCACCGGAGCGACAGGAGCGACAGGCGCGAC	Design primers
317550	ACGGGAGCAACCGGGGCAACGGGGGCAACAGGGGCCACAGGAGCAACAGGAGCA	Design primers
317664	GCCACAGGAGCGACAGGAGCAACAGGAGCCACGGGAGCAACAGGAGCCACGGGAGCCACAGGAACCACAGGAGCAACAGGAGCAACAGGAGCCACAGGA	Design primers
317764	CAACAGGGGCCACAGGAGCAACAGGGGCAACGGGAGCAACGGGAGCGACAGGAGCAGCAGGAGCAACAGGAGCCACAGGGGCCACAGGAGCAACAGGGGCAACGGGAG	Design primers
317873	GACGGGAGC-GACGGGAGC-AACGGGAGC-GACAGGAGC-GACAGGAGC	Design primers
317928	ACAGGAGCAACCGGGGCGACGGGAGCAACGGGAGCGACGGGAGCAACGGGAGCGACAGGAGCAACAGGAGCA	Design primers
318001	CGGGAGCAACAGGAGCCA-CAGGAGCAACAGGAGCCA-CAGGAGCAACAGGAGCCA	Design primers
318069	GCGACGGGAGCAACGGGAGCGACAGGA	Design primers
351593	AA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA	Design primers
376673	TTATGTTAGTTGTTGTTAGTTTGTGTTTGT	Design primers
680002	GATAACCAGCAGCCAACCAGCAGATAACCATCGGATAACCACTA	Design primers
1199282	TAGTATTAATAGTAGTAATAGTATAAA	Design primers
1313683	TAAAGCAAACAAAATCAAACTAATGCAAAC	Design primers
1329574	ATTAAATAAAACTAAATTAAATAAA	Design primers
1556260	GGTGCGACAGGAGCGACAGGTGCAACA	Design primers
1556333	GGAGCGACCGGAGCAACGGGAGCAACAGGGGCAACGGGAGCAACAGGAGCAACA	Design primers
1559128	GGAACTACA-GGAGCGACA-GGAGCGACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCCACA-GGAGCCACA-GGAGCGACA-GGAGCAACA-GGAGCCACA-GGAGCAACA-GGAGCCACA	Design primers
1559272	GGGGCGACA-GGGGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA-GGAGCAACA	Design primers
1559348	CACAGGAGC-GACAGGAGC-GACAGGAGC-CACAGGAGC	Design primers
1559409	GCCACAGGAGCCACAGGGGCAACAGGA	Design primers
1559442	GGAGCAACGGGAGCCACAGGAGCAACAGGGGCAACAGGAGCAACAGGGGCAACA	Design primers
1559526	GCAACAGGG-GCAACGGGG-GCAACGGGG-GCAACAGGG	Design primers
1559609	CACAGGAGC-CACAGGAGC-TACAGGAGC-CACCGGAGC	Design primers
1559646	ACGGGTGCCACAGGAGCCACAGGAGCCACAGGAGCAACGGGCGCAACAGGAGCA	Design primers
1577478	ATAAACATATGAACATATAATCAT	Design primers
1646632	GAACTTC-GAGCTTC-GAGCTTC-AAACTTC	Design primers
1694232	GTCTTTGCCTTTGTCTTTGTCTTT	Design primers
1723447	TCAACCCAGCCAACCCAGTCAATCCAG	Design primers
1789237	AAAATAATTAATATAATTAAATTAATT	Design primers
1811026	AAGTTGTGGGACAGAAGTTAAGGGACAGAAGTTAAGGGACAG	Design primers
1858392	AATGCTCCTTCCTACGGTCAGAATACATCCTCCTACGGTCAGAGTACGTCTTCCTACGGTCAG	Design primers
1879449	ATTAGACG-ATTAGACG-ATTAGAAG	Design primers
1971042	TTTTAGATT-TCTTAGATT-TCTTAGATT-TCTTAGATT	Design primers
1976136	AATGATGACGACGATGACGACGACGATGACGACGAC	Design primers
1976173	ATGTAG-ACGATG-ACGATG-ACGATG-ACGATG-ACGATG-ACGATG-ACGATG-ACGATG	Design primers
1976228	CGATGA-TGACGA-CGATGT-AGACGA-TGACGA-TGACGA-CGATGT-AGACGA-TGACGA-TGACGA	Design primers
1976289	GACGACGATGTAGACGATGACGATGACGACGACGATGATGACGAC	Design primers
2160140	CAGAATAATAGAAAATAATAGAGGATAATA	Design primers
2206822	TTGCTGCTGACCAAAGCCTTGTTGCTGACTAAAGCCATGCTGCTGTCCGAAGCC	Design primers
2342370	AATTCGGATTCGAATCCGAATTTG	Design primers
2356660	TAAAGAATAG-TGAAGAGTAG-TGAAGAGTAG-TGAAGAGTAG	Design primers
2606704	GTTCAAGTTCTATTTCAATTTCAA	Design primers
2742694	CTGAAATAAGGCTTAAATAACGCTGAAATAAAT	Design primers
2760912	ATTATCATAATCATTTTCTTTATC	Design primers
3001470	CTGTTCCTGTGCCTGATCCTGTTT	Design primers
3017104	TTTTTAAGCATTATTATGCAGTTTTAAGTA	Design primers
3160809	TACGGTTACGGCTAGGGTTACGAT	Design primers
3215187	AGATATAC-CGATATAC-CGATATAC	Design primers
3301907	ATAATATAAAATAGTATAAAATAAT	Design primers
3311726	TTGTCTTTTTCTTTGTCCTTATCT	Design primers
3316197	TTTGGA-TTGGGA-TTGGGA-TTGGGA	Design primers
3553150	CCTCTT-CCTCTT-CCCCTT-CCTCAT	Design primers
3654052	TTAGCTTTAGTTTTAGCTTTAGCA	Design primers
3701106	AATTTTCAGCTGATTTTCAGTTAAGTTTCAGCC	Design primers
3720737	ATTTTAAAATCTTAAAATCTTAAA	Design primers
3806452	CTCTCTTTCACTCTCTTTTACTCTCCATCA	Design primers
3866772	GCCGCCGCCTCCGCCGCCGCCTCCGCTGCC	Design primers
3866988	GCC-GCC-GCT-GCC-GCC-GCT-GCT-GCC	Design primers
4122201	ATACAATATACTACAACATAATCCATTATA	Design primers
4204867	CACTCTTTCCCACTCTTTGCCTCTCTGTCC	Design primers
4492587	GAATAATTACGAATAATCTCGAAAAATTCC	Design primers
4542878	GCAGCCGCAGGCGCAGCGGCAGCC	Design primers
4551723	AATTCGGATTCGAATCCGAATTTG	Design primers
4603492	TTCGAATTCAAATTCTAATTCGGA	Design primers
4638961	ACTTA-ACTTA-ACTGA-ATTTA-ACTTT	Design primers
4785269	CAATGA-CAATGA-AAATGA-AAATGA	Design primers
4830082	TTTTAAA-ATCAATA-ATCAATA-ATCAATA-ATCAATA-ATCAATA-ATCAATA-ATCAATA-ATCAATA	Design primers
4881103	GAGGTTC-GAAGTTC-GAAGTTC-GAGGTTC	Design primers
5027852	TGCATACCT-TCCATGCCT-TCCATACCT-TGCATTCCT-TGCATCCCT-TGCATCCCT-TGCATCCCT-TGCATCCCT-TGCATCCCT-TGCATCCCT	Design primers
5027952	GCATCCCCG-GCATACTTG-GCATACTTG-GCATACTTG-GCATACTTG-GCATACTTG	Design primers
5063931	TCGTACTAT-CCGTACTAT-CCGTACTAT	Design primers
5127795	TTGGTG-TTGGTG-TTTGTG-TTTGTG-TTGGAG	Design primers
5128794	ACTTTACCTGAATTTTAGCTGAATTTTAGCTGA	Design primers
5142393	CTTAATCTTAAACTGAATCATAAT	Design primers
5146176	AAGTTGTTGAACTTGTTGAACTTGTTG	Design primers
5267606	CTTCCAGATTTGCCTCCTGATTTGCTTCCAGATTTG	Design primers
5278685	CTATGTCT-TTATTTCT-TTATTTCT-TTATGTCT-TTTTTTCT-TTATTTCT	Design primers
5300109	TGGGTGACT-TGGGTAACT-TGGGTAACT-TGGGTAACT	Design primers
5309635	AT-CT-TT-GT-CT-TT-TT-CT-TT-AT-TT-TT	Design primers
5393123	CTCCCGCCGGAGCTTCCGCCGGAGCTTCCGCCTGAG	Design primers
5417134	CGAATTAATAACACCTTTGTCTTAATAACACCTTTGTCTTAATAACACCTT	Design primers
5443225	AAA-AAA-ATA-ATA-AAA-AGA-AAA-AAA-A	Design primers
5490713	CCATTACTGCCATTACTACCATTGCTG	Design primers
5750505	CCTAAATCTATTCCCAAATCTATCCCGAAATCCATT	Design primers
5786400	TCCTGAGTCCCTTCTACCTCCTGAGTCCCCTCTACGCCTTGAGTGCCTTCTACC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

210893

TATAATTTTAAAATTTTAAAATTT