Microsatellites /Tandem Repeats database

Genome: Rickettsia prowazekii str. Chernikova

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
22887AAAATAAAAATAAATAAACTAAAAADesign primers
38044AT-AT-GT-AT-GT-GT-AT-AT-TT-AT-AT-ATDesign primers
188715CATCAACTTCAACATTAACATCATDesign primers
235931AGTTACTGTAGTTATTGTTGTTACTGTDesign primers
339501TAATTAAATTTAATATTATTTAAATDesign primers
448226TCTTAG-TGTTAG-TATTAG-TATTAG-TATTAGDesign primers
496175AAATTAACTTATATTTAATTAATTTDesign primers
558708GATACTGGAGGTCGAGAC-GATACTGGAGGTCGAGAC-GATACTAGGGGTCGAGGCDesign primers
560453AAATATTAAAATTTTAAAAAATTADesign primers
591394TTCTTATAATAATATTATTTATAATTATATTTATTGTACTAATATDesign primers
610068TATATTAATTATAATAATTTTATTAATDesign primers
720037ATTTAATTTCATTTAATATATTTTADesign primers
792353TTAATTTTTATTATAATTTTAACTTTAATTDesign primers
796129CCACCCATG-CCACCCATG-CCGCCCATGDesign primers
810471TTTTTTTATTTTTTTTATTTTTTTADesign primers
845814TATTTTAATTTTTTTTATTATATTTDesign primers
893839TTTAGGATTTTAGGACTTTAGAATDesign primers
896525ATACCTTGTTGTATACCTTTTTCTACACCTTGTTGTDesign primers
947927TTATT-ATATT-TTATA-TTATA-TTATADesign primers
990328AAAACTAAATAATACTAAATTAAACGAAATDesign primers
1012045ATATTAAATTATATAATTTTCTATTATATADesign primers
1062343TAACAATAACAAACAGTAACAAAAAATAACDesign primers

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