Microsatellites /Tandem Repeats database

Genome: Aeromonas salmonicida subsp. salmonicida A449

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
577947GGCGTTAT-GCCGTTAT-GCCGTTAT-GCCGTTAT-GCCGTTAT-GCCGTTATDesign primers
645995ATGGTC-ATGGTC-ATGGTC-ATGGTCDesign primers
874627TGTCTATCGC-TGTCTATCGC-TGTCTATTGCDesign primers
874883TTGTTT-TTGTTT-TTGTTT-TTGTTTDesign primers
945424TGCCAC-TGCCAC-TGCCAC-TGCCACDesign primers
1027675TTGATG-CTGATG-CTGATG-CTGATG-CTGATG-CTGATGDesign primers
1375959ATACTGCTG-ATCCTGCTG-ATCCTGCTG-ATCCTGCTG-ATCCTGCTG-ATCCTGCTGDesign primers
2008653GCTGCGTGA-CCTGCGTGA-CCTGCGTGA-CCTGCGTGA-CCTGCGTGA-CCTGCGTGADesign primers
2020401TGGATAAC-GGGATAAC-GGGATAAC-GGGATAAC-GGGATAAC-GGGATAACDesign primers
2424350AAGCTGAG-AAGTTGAG-AAGTTGAG-AAGTTGAG-AAGTTGAG-AAGTTGAGDesign primers
2540303AGCTGGC-AGCTGGC-AGCTGGC-AGCTGGCDesign primers
2747173TATAAAT-TAAAAAT-TAAAAAT-TAAAAAT-TAAAAAT-TAAAAATDesign primers
2817249GGTAAAAACAGTGATAAAAACAGTGATAAAAACAGTDesign primers
2957955ACCGACCAGCCGGGCAGCGCATCGAGCAGCCGGGCAGCGCATCGAGCAGCCGGGCAGCGCDesign primers
3038306ATTTACGTT-ATTTACGTT-ATTTACGTT-ATTTACGTTDesign primers
3043075TATGATGAGC-CATGATGAGC-CATGATGAGC-CATGATGAGCDesign primers
3094954GCCGGAGCT-GCCGGAGCT-GCCGGAGCT-GCCGGAGCTDesign primers
3139412GGCAACACA-GGCAACACA-GGCAACACA-GGCAACACADesign primers
3686936GCCAGCTC-GCCAGCTC-GCCAGCTCDesign primers
3788406CCAGCTTGA-CCAGCTTGA-CCAGCTTGADesign primers
4298057CAGCATGA-CAGCATGA-CAGCATGA-CAGCATGADesign primers
4364351AATTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGC-AGTTGAGGCDesign primers
4423146GGAAGGGATAA-AGAAGGGATAA-AGAAGGGATAADesign primers
4454589GATGCTGCACTC-TATGCTGCACTC-TATGCTGCACTCDesign primers

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