Microsatellites /Tandem Repeats database

Genome: Isoptericola variabilis 225

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
19211TTGGCGAGGTAGCGCTGGGC-TTGGCGAGGTAGCGCTGGGC-TTGGCGAGGTAGCGCTGGGC-TTGGCGAGGTAGCGCTGGGC-TTGGCGAGGTAGCGCTGGGCDesign primers
127100CCTGAGGATCCGACAAAGGAC-CCTGAGGATCCGACAAAGGAC-CCTGAGGATCCGACAAAGGACDesign primers
161297CATCTCGCGAGGTAGCGCTG-CATCTCGCGAGGTAGCGCTG-CATCTCGCGAGGTAGCGCTGDesign primers
245420GACGGTGACGGCCCGGGT-GACGGTGACGGCCCGGGT-GACGGTGACGGCCCGGGTDesign primers
245527CGACGGCAA-CGACGGCAA-CGACGGCAADesign primers
245564GACGGCACG-GACGGCACG-GACGGCACGDesign primers
255846GCCGTGAGC-GCCGTGAGC-GCCGTGAGC-GCCGTGAGCDesign primers
269032ACCCCCGCTCCC-ACCCCCGCTCCC-ACCCCCGCTCCC-ACCCCCGCTCCCDesign primers
275837CGCGCTACTTCGCGGACTCG-CGCGCTACTTCGCGGACTCG-CGCGCTACTTCGCGGACTCGDesign primers
467221CGCGGA-CGCGGA-CGCGGA-CGCGGADesign primers
519427CGCCGAGGTAGCGCTCCGCT-CGCCGAGGTAGCGCTCCGCT-CGCCGAGGTAGCGCTCCGCT-CGCCGAGGTAGCGCTCCGCTDesign primers
587663AACGCGCTACCTCGGCGGGG-AACGCGCTACCTCGGCGGGG-AACGCGCTACCTCGGCGGGG-AACGCGCTACCTCGGCGGGGDesign primers
602752CTCGCCGAGGTAGCGCTCGG-CTCGCCGAGGTAGCGCTCGG-CTCGCCGAGGTAGCGCTCGGDesign primers
646176AGCGCGACGTCGCCTGCC-AGCGCGACGTCGCCTGCC-AGCGCGACGTCGCCTGCC-AGCGCGACGTCGCCTGCCDesign primers
677760CGCGACATAGCGCTCGGCGC-CGCGACATAGCGCTCGGCGC-CGCGACATAGCGCTCGGCGCDesign primers
878502CCGACGTGCCGA-CCGACGTGCCGA-CCGACGTGCCGADesign primers
909179CCGAGCGGGCCGAGGGCG-CCGAGCGGGCCGAGGGCG-CCGAGCGGGCCGAGGGCGDesign primers
1100175GGCGGCAGCAGCTCGGGCGGCAGCAGCTCGGGCGGCAGCAGCTCGDesign primers
1110648CGCCGAGGTAGCGCACCTCC-CGCCGAGGTAGCGCACCTCC-CGCCGAGGTAGCGCACCTCC-CGCCGAGGTAGCGCACCTCCDesign primers
1288051CACCCCGCA-CACCCCGCA-CACCCCGCADesign primers
1464919GCCCGACGATCT-GCCCGACGATCT-GCCCGACGATCT-GCCCGACGATCTDesign primers
1557657GACGAG-GACGAG-GACGAG-GACGAGDesign primers
1693578GCCCGACCACCT-GCCCGACCACCT-GCCCGACCACCTDesign primers
1908416CGCACCGGG-CGCACCGGG-CGCACCGGGDesign primers
2030551CGCCCGACGACGGCG-CGCCCGACGACGGCG-CGCCCGACGACGGCGDesign primers
2071515ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGC-ACCGAGGTCGACGGCDesign primers
2100698CCGCGAGGTAGCGCGTTCTT-CCGCGAGGTAGCGCGTTCTT-CCGCGAGGTAGCGCGTTCTTDesign primers
2474686GTGGTC-GTGGTC-GTGGTC-GTGGTCDesign primers
2526281GCGTGCGCTACCTCGGCGCG-GCGTGCGCTACCTCGGCGCG-GCGTGCGCTACCTCGGCGCGDesign primers
2694206TTCACCGCGAGGTAGCGCGT-TTCACCGCGAGGTAGCGCGT-TTCACCGCGAGGTAGCGCGT-TTCACCGCGAGGTAGCGCGTDesign primers
2708146CGGCAC-CGGCAC-CGGCAC-CGGCACDesign primers
2736916CGAGGTAGCGCTGCGCCTCG-CGAGGTAGCGCTGCGCCTCG-CGAGGTAGCGCTGCGCCTCG-CGAGGTAGCGCTGCGCCTCG-CGAGGTAGCGCTGCGCCTCGDesign primers
2737168AGCGCTACCTCGGCGCGGCG-AGCGCTACCTCGGCGCGGCG-AGCGCTACCTCGGCGCGGCGDesign primers
2912466CCCGCGAGGTAGCGCTCCAC-CCCGCGAGGTAGCGCTCCAC-CCCGCGAGGTAGCGCTCCAC-CCCGCGAGGTAGCGCTCCACDesign primers
2914001AGCGCTACCTCGCGGCGTGC-AGCGCTACCTCGCGGCGTGC-AGCGCTACCTCGCGGCGTGCDesign primers
2915373CGTACGACC-CGTACGACC-CGTACGACC-CGTACGACCDesign primers
2964754CACCCGCCGAGGTAGCGCTG-CACCCGCCGAGGTAGCGCTG-CACCCGCCGAGGTAGCGCTG-CACCCGCCGAGGTAGCGCTGDesign primers
3117240GCGCTACCTCGGCGCGCGGT-GCGCTACCTCGGCGCGCGGT-GCGCTACCTCGGCGCGCGGTDesign primers
3213130CCACGGCGA-CCACGGCGA-CCACGGCGADesign primers

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