Microsatellites /Tandem Repeats database

Genome: Streptococcus equi subsp. zooepidemicus

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
130480CAAAGACAATGACAAAGGCAAAGADesign primers
187079AACCGGTAGATCCGGTAGACCCAGTAGATCCGGTAGACCCAGTGGATCCGGTAGDesign primers
250700GA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TADesign primers
411189CGTCTGCTCATCTGCTTGTCTGCTDesign primers
420337TTTATTTTTTTAATTTTTTATTTCDesign primers
489339CTTTAGCATTAGCTTTTGCTTGAGDesign primers
508231ATAGCAGAGCTTAGCATGGCATTGCDesign primers
621554GGTTGAGGCGCTGGTTTAGGCTCA-GGCTTAGGCATTGGTTTAGGCTCA-GGCTTAGGCATTGGTTTAGGCTCA-GGCTTAGGCATTGGTTTAGGCTCA-GGCTTAGGCATTGGTTTAGGCTCA-GGCTTAGGCATTGGTTTAGGCTCADesign primers
621699GCTTAGGCTGAGGTTCCG-GTTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GTTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GTTTAGGCTGAGGTTCCG-GCTTAGGCTGAGGTTCCG-GTTTAGGCTGAGGTTCCGDesign primers
621937TGGCTTAGGCTCAGGATCAGGCTTAAGTTCAGGATCTGGCTTAGGCTGAGGTTCDesign primers
621996TTGGCTTAGGCTCAGGATCTGGCTTAGGTTCAGGATCAGGCTTAGGTTCAGGATDesign primers
622093TGGCTTAGGCTCAGGATCTGGCTTAGGTTCAGGATCAGGCTTAGGCTGAGGTTCTGGTTTAGGCGCAGGGTCDesign primers
936087TTGCTT-TTGCTT-TAGCTT-TTGATTDesign primers
1271415GTGCTTCTGGCTTAGGCATTGGATCTGGCTTAGGCATTGGATCTGGCTTAGGCADesign primers
1271475TAGGCATTGGCTTAGGCA-TTGGCTCTGGCTTAGGCA-TTGGCTCTGGCTTAGGCA-TTGGCTCTGGCTTAGGCA-TTGGCTCTGGCTTAGGCA-TTGGCTCTGGCTTAGGCA-TTGGCTCTGGCTTAGGCA-TTGGCTCTGGCTTAGGCADesign primers
1271620TGGCTTAGGCATTGGCTC-TGGCTTAGGCATTGGCTC-TGGCTTAGGCATTGGCTTDesign primers
1271697TTGGCTTAGGCATTGGCT-CTGGCTTAGGCATTGGAT-CTGGCTCTGGCATTGGCT-TAGGCTCTGGCATTGGCT-TAGGCTCTGGCATTGGCT-TAGGCTCTGGCATTGGCT-TAGGCTCTGGCATTGGCT-TAGGCTCTGGCATTGGCT-TAGGCTCTGGCATTGGCTDesign primers
1279411GGTTTAGGTTGAGGTTTTGGCTTADesign primers
1279473TTCTGGTTTTGGCTCTGGCTTAGGCTCAGGTTTTGGTTCTGGCTTAGGTTCTGGTTTTGGCTCAGGTTTTGGDesign primers
1503586AAAATCCT-TCCATGCT-TCCATGCT-TCCATGCT-TCCATGCT-TCCATGCT-TCCATGCT-TCCATGCT-TCCATGCTDesign primers
1550114AA-TT-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AADesign primers
1639109ATTGTTACAATTTTTACAATTTTTACADesign primers
1657547GGTTCTGGCTTAGGCTCAGGTTTTGGCTCTGGCTTAGGCTCAGGTTTTGGTTCTGGCTTAGGCTCAGGTTTTGGCTCTGGCTTAGGCTCAGGTTTTGGCTCTGGCTTAGGCTCAGGTTTTGGTTCTGGCTTAGGCTCAGGTTTTGGCTCTGGCTTAGGCTCAGGTTTTDesign primers
1674359ATGCCTAAACCTGAGCCTAAGCCAGAACCTGAGCCTAAGCCAGAACCTGAGCCTDesign primers
1674497ATGCCTAAACCTGAGCCT-AAGCCAGAACCTGAGCCT-AAGCCAGAACCTGAGCCT-AAGCCAGAACCTGAGCCTDesign primers
1697056ACCTAACCCTAAACCTAGTCCTAAGCCTAADesign primers
1697092GCCTAGTCCTAGCCCTAGTCCTAGDesign primers
1759180TTATTTGATTAGCAAATAATTTCATTACCAAATAATTTGATTATCAAADesign primers
1830797TACACCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCC-AGAGCCTAAGCCDesign primers
1949115AAAGGTGAAAAAGGCGAAAAAGGAGAADesign primers
2008528TGGTTGATAGTAGTTGATAAGGGTTGACAGDesign primers
2091591AACAAGCTAATCAACAGGCTAACCAAAGAGCTAATCDesign primers
2092428CACCAAAAGCTCCAAAAGTACCAAAAGDesign primers

Please help us improve this resource by reporting problems, suggestions etc.