Microsatellites /Tandem Repeats database

Genome: Kangiella koreensis DSM 16069

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
66122GTTTAAGGAGTTAGATTCAGGAGTTAGTTTACGGAGATADesign primers
121416CAAAACCTGTCAAAACATATCAAAAGTTGTDesign primers
193725AGGTGGTGGTGGTGGTGGCGGTGGDesign primers
280976TGATATGGGTGGTATGGGTGGTATGGGDesign primers
347481GGGAATAAGTCTCATAGGGAATAAGCCTCACAGGGAGTGAGTCTCGTADesign primers
635709CTGCTTCCGCTTCTGCTTCAGCTTDesign primers
663115TT-CT-TT-CT-CT-TT-GT-CT-TT-CT-CT-TT-GT-CT-TTDesign primers
796808TCAGTAATAAGCAGTAATAAACAGTGATAADesign primers
910008ACTATAACAACTTTAGCTGAAACAACTTTAGCTATAACTACTTTADesign primers
939059TTGAAGATG-ATGAAGATG-ATGAAGATGDesign primers
1034710CGAAGAAGGCAAATGCGGTGAAGGCAAGTGCGGCGAAGGCAAATGDesign primers
1034782AGAAGGTAAATGTGGTGAAGGTAAGTGCGGCGAAGGTAAGTGCGGDesign primers
1038443GTATCAGTGTGA-ATATCAGTGTGA-ATATCGGTGTGADesign primers
1053028TAGAAA-TAGAAA-TAGGAA-CAGAAADesign primers
1057734TAAACCTAAACTTATACCGAAACCTATACCDesign primers
1077037AACTAGAACAAGAACCAAAACAAGAACGAGAACAAADesign primers
1272745TACCACTACCTCAACCACTACAACDesign primers
1312317AACTTTAATAAGAG-AACTTTAATAAGAG-AACTTTAAAAAGCGDesign primers
1496539ATTATTTGCGCAATTATTCGCGTAACTATTTACGCAATTCTTTGCGAADesign primers
1737710GTAGATCACTCAAAC-ATGAATCACTCAAAC-ATGAATCACTCAAAC-ATGAATCACTCAAACDesign primers
1917433TCATCAACTGACAA-ATATCAACTGACAA-ATATCAACTGACAADesign primers
1994877TTTGAGCAT-GTTGAGCAT-GTTGAGCATDesign primers
1999972GCTTCTGCTTCAGCTTGTGCTGCTGCATCTDesign primers
2594760CCAAAAATATCACCAAAAACATCGCCAAAGATGTCADesign primers

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