Microsatellites /Tandem Repeats database

Genome: Methanobacterium sp. AL-21

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
26363TTTAAAAATTTTAAAATTTAAATADesign primers
72795TATAAGTTATAAGAAATAAGTTATAAGTDesign primers
72903GTTATAAGTAATAAGTTATAAGTTATAADesign primers
80378TATAAGTTATAACTTATAAGATATAAGTDesign primers
113673TTTACTAAATATATATTAAATAATTAATAAATADesign primers
119543TATTTTAAATTATATTTAATTTTTTCAAATDesign primers
145509AA-AA-AA-AG-AA-AA-AT-AA-AA-AA-AA-AG-ADesign primers
176610ATATATAACAACATATAACAATAGTTAACADesign primers
214072CAATTACAAGTACAATAACAATTGDesign primers
400139GAAAATAAAAAAAAATAAAAGAAAADesign primers
617474TTCTACTTCTTCTTCCACTTCTTCDesign primers
709059AAGTATCAAAAGCATCAAAAGCATCAADesign primers
785850AGTTTTT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAAT-ACTAAATDesign primers
815666TATTATTATTATTAATATTATTATDesign primers
859150TCCATTTTTTTCCACTCTTTCGCATTTTTTDesign primers
950326ATT-ATT-ATT-AGT-ATT-ATT-ATT-ATTDesign primers
1072066ATATAATATTAGATAATTTAATAAAAAATADesign primers
1125898TTTAAGCAATA-ACTAAGCAATA-ACTAAGCAATA-ACTAAGCAATADesign primers
1190941TTTTTTTTCTATTTTATTTTTTCTTDesign primers
1193703TAATTTATTTTGATTTAAATTTATTDesign primers
1236742AATATTTTTTACTTTTTTTTATTAATTTTTDesign primers
1237553TTAAGATGAATTAAAAAGAATTAAGGTGATTTAAAATGAGDesign primers
1249253ATTTATTTTAATTAAATTTTATTTCATTAAATCTADesign primers
1288658AAAAAAATTGCAAAAATTTGCAATAAATTGDesign primers
1322234AGATTAATATTAAGATTAATATTADesign primers
1399857GGTTTAATATGTTTTATTATGGTTTCATACDesign primers
1400540AAAACAGCTTAAAAAAGGTTAAAACAGCATDesign primers
1433017ATTGCCAGCCCAAATGCCAGTCCAATTGCAAGCCAADesign primers
1467367CAAAATAAAAATCAACATCAAAAADesign primers
1536432TTCTGG-TTCTGG-TTCTAG-TTCTGG-TTCTGTDesign primers
1610701TTAGTATTATTATTAGTTTTAGTGDesign primers
1640351ATAATTATAAGTGTAATTATAATTDesign primers
1646295GAAGAAGTAGTC-AAAAAAGTAGTC-AAAAAAGTAGTC-AAAAAAGTAGTCDesign primers
1681509ATACCTAAAAATTCCTTAAAATTCCTTAAADesign primers
1699828AAAAAAAATATAAAAAAAGAAAAATDesign primers
1832698AAGAATCATCTACACCAGAATCATCAGCAC-CAGAATCATCTACACCAGAATCATCAGCAC-CAGAATCATCTACACCAGAATCATCTACAC-CAGAATCATCTACACCAGAATCATCTACAC-CAGAATCATCAGCACCAGAATCATCTACAC-CAGAATCATCAGCACCAGAATCATCAGCAC-CAGAATCATCAGCACCAGAATCATCTACAC-CAGAATCATCAGCACCAGAATCATCTACAC-CAGAATCATCTACACCAGAATCATCAGCAC-CAGAATCATCTACACCAGAATCATCTACAC-CAGAATCATCAGCACCAGAATCATCTACAC-CAGAATCATCAGCACCAGAATCATCTACAC-CAGAATCATCAGCACCAGAATCATCAGCAC-CAGAATCATCAGCACCAGAATCATCTACAC-CAGAATCATCAGCACCAGAATCATCAGCAC-CAGAATCATCTACACCAGAATCATCAGCAC-CAGAATCATCTACACCAGAATCATCAGCACDesign primers
1837272TATTTTAATTTAATTTGTTTTATTTDesign primers
1843664AATTTAGTTTTATTTAAATTAATTTDesign primers
1846069TACAGTTTCAACAAGTAAAACAACTACTTCAACAAGTAAAACAACTGTTTCAACAAGTAAAACDesign primers
1864398GATATATTAAAATTTTATATATTAATTTTTAATATATAAAAATTTDesign primers
1865382TTCCTATTTTTTCCTTTTATTTCCTCTTTTDesign primers
1870013TTTTCTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTA-ACAACTTADesign primers
1883460ATAAATACAAATGTAAATATAAAADesign primers
1980915CTTTTCAAGTGTTTTCAAGACTTTTGATGTDesign primers
2014627AATATTGGTTAAATAATGGTTAAATTTTGGATADesign primers
2044203CTTAAAAAATAATAAAAAATTTAAAAAAATDesign primers
2046218GAGAATCTATAGAGAATTTGTAGGGAATTTATAGAGAATTTCTADesign primers
2050520TTTTGGAATTTTAGGAATTTTAGGAATDesign primers
2136507ATTTAA-ATTTAA-ATCTAA-ATTAAADesign primers
2205752AAAATAAAAAAAAGTAAAAATAAATDesign primers
2284577AGAAGATGAAGAAGAAGCTGAAGAAGAGGAAGGAGADesign primers
2284930TGAGGAAGAAGA-AGAGGAAGAAGA-AGAAGAAGAAGADesign primers
2295090TAAATACAAATAGATAAAAATAAGTATAAADesign primers
2336939AGGTATATAAGTATATAAGTATATDesign primers
2350343ATTCTTTTTCTTATTATTATTCTADesign primers
2419689TT-TT-TT-TC-TT-TT-TT-TT-TA-TT-TT-TA-TDesign primers
2477076TGTGGATGTGGGTGCGGATGTGAADesign primers
2497229AATAATTATTAATGATTGTTAATGATAATTDesign primers
2510044CGTGCCAGGACC-ATCACCAGGACC-ATCACCAGGACC-ATCACCAGGACC-ATCACCAGGACC-ATCACCAGGACC-ATCACCAGGACC-ATCACCAGGACCDesign primers
2514932AA-AA-AA-AA-AA-GA-AA-AA-AA-GA-AA-TA-ADesign primers
2538717CATTTCCGTTACCATTATCTCCATTACCATTGTTTCCATTACCATTGTTTCCATTACCATDesign primers
2548767ATTTTTATTTTGATTATTATTTTGATTTTCDesign primers

Please help us improve this resource by reporting problems, suggestions etc.