Microsatellites /Tandem Repeats database

Genome: Hirschia baltica ATCC 49814

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
436703AAGATGCAGATGAATATGAAGAAGDesign primers
725912TCGTGCTCTGGCGTACTCTGTCGTGCACTTDesign primers
777849ATACCAAAACCAATACCGACACCADesign primers
807569GCTTCTGCTTCGCCTTCTTCTTCTDesign primers
836193CAAAATGTGGCTAATTGTGGCGAAATGTGGDesign primers
1035279AATTTGAAAAATTGAAAATCTGAADesign primers
1160450AGCAAATCTCTATTCGGGGCAAATCTCTATTCTGGGTAAACCTCTATTCGGDesign primers
1360205CCATCATTTTCTATCATGTTTCGTCATTTTDesign primers
1620169TCTACT-TCATGC-TCATGC-TCATGC-TCATGC-TCATGC-TCATGC-TCATGC-TCATGC-TCATGC-TCATGC-TCATGCDesign primers
1661309TTGGTGTTTTGTGTATGGTGTTTGGTGADesign primers
1907597TCACAAGC-ATTCAGGC-ATTCAGGC-ATTCAGGC-ATTCAGGC-ATTCAGGC-ATTCAGGC-ATTCAGGC-ATTCAGGCDesign primers
1922929GCCACG-GTTATG-GTTATG-GTTATG-GTTATG-GTTATG-GTTATG-GTTATG-GTTATGDesign primers
1953720CGG-AGG-AGG-AGG-CGG-TGG-TGG-AGGDesign primers
1953745GGC-GGA-GGT-GGT-GGT-GGC-GGA-GGT-GGT-GGC-GGA-GGC-GGT-GGT-GGTDesign primers
2042307ATGATGATGACGATGATGTTGATGDesign primers
2236116CAC-CAG-CAG-CAG-CAA-CAG-CAA-CAGDesign primers
2240160TCAACGCCCTGTCATCGCCGTGTTAACGCCCGGDesign primers
2507759TGA-TGA-TGA-CGA-TGA-TGA-CGA-TGADesign primers
2788917AAACAAAACCCAACAAAACAGAACADesign primers
3186657AACGATACCTAACAGTACCTCCCGATACCTDesign primers
3260379AAC-AGC-AGA-AGC-AGA-AGC-AGA-AGC-AGA-AGC-AGA-AGCDesign primers
3285326AGG-AGG-AGG-AGG-AGG-CGG-AGG-TGGDesign primers

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