Microsatellites /Tandem Repeats database

Genome: Streptococcus equi subsp. zooepidemicus ATCC 35246

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
133274CAAAGACAATGACAAAGGCAAAGADesign primers
190426GATCCGGTAGATCCGGTCGATCCAGTAGATCCAGTADesign primers
219295ACCTAGTCCATTCAT-ACCTTGACCGTTCAT-ACCTTGACCGTTCAT-ACCTAGTCCATTCATDesign primers
219356CCTTGACCGTTCAAG-CCTTGACCGTTCAAG-CCTTGACCGTTCATA-CCTTGACCGTTCATA-CCTTGACCGTTCATADesign primers
220968ATAAAGT-ATAAAAT-ATAAAAT-ATAAATTDesign primers
222505TCACCTTTTTCTCCTTTTTCTCCTTTTTCACCTTTADesign primers
233312CAAAAAAGGGCAAAATGGGGAAAAAAGGGGDesign primers
338583TTTAGCTTCAGG-CTTAGGCTCTGG-CTTAGGCTCTGG-CTTAGGCTCTGG-CTTAGGCTCTGG-CTTAGGCTCTGGDesign primers
457334CAACAAAATTCAAAAAAATAAAACAAAAATDesign primers
499810GGTTCTGGCTTAGGTTTAGGCTTAGGTTCTGGCTGAGGTTTAGGCTTADesign primers
516943AAGAGGTTAAACCTGAGCCTAAGCCAGAGCCAAAACCTGAGCCTAAGCCAGAGCCAAAACCTGAGCCTAAGCDesign primers
517016AGAACCAAAACCTGAGCCTAAGCC-AGAACCAAAACCTGAGCCTAAGCC-AGAGCCAAAACCTGAGCCTAAGCC-AGAACCAAAACCTGAGCCTAAGCC-AGAGCCAAAACCTCAACCTAAACCDesign primers
611340TCCAGCAGG-CCCAGCAGG-CCCAGCAGGDesign primers
656930ATTAGCAT-GGAAGCAT-GGAAGCAT-GGAAGCAT-GGAAGCAT-GGAAGCAT-GGAAGCAT-GGAAGCATDesign primers
902925CCTGAACCTAAGCCAGAACCAAAACCTGAGCCAAAACCAGAACCTAAACCAGAACCTAAACCAGAACCTAAGDesign primers
903009CCAGAACCTAAGCCTGAGCCTAAGCCAGAACCAAAACCAGAACCTAAGDesign primers
910630GCCAGAGCCTAA-GCCAGAGCCTAA-GCCAATGCCTAA-GCCAGAGCCAATDesign primers
910679CCTAAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGDesign primers
910732GCCAGAGCCTAAGCCAATGCCTAAGCCAGAGCCAATDesign primers
910769CCTAAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGDesign primers
910822GCCAGAGCCTAAGCCAATGCCTAAGCCAGAGCCAATDesign primers
910862AAGCCAGAGCCTAAGCCA-GAGCCAATGCCTAAGCCA-GAGCCAATGCCTAAGCCA-GAGCCAATGCCTAAGCCADesign primers
975784GTAAGTTATGGTAACTTACGGTAAGTATTGDesign primers
1253344TTTCTTTTGTTTTCCTTGCTTTTCADesign primers
1529034CCAGATCCAATGCCACAACCAATGCCACAACCAATGDesign primers
1530345AGCCAGAACCAGAACCAGAGCCAADesign primers
1530389CCTGAG-CCTGAG-CCAGAG-CCTAAGDesign primers
1530440GAGCCTAAGCCTGAGCCGCAGCCTDesign primers
1530509CCGGATCCTCAGCCTAAA-CCTGAGCCGCAGCCTAAA-CCGGAGCCTCAGCCTAAA-CCGGAGCCTCAGCCTAAA-CCAGATCCTCAGCCTAAA-CCGGAGCCACAGCCTAAADesign primers
1554125TATTTTATCAATTTTATCTATTTTTTCDesign primers
1770716AAATAAAAAATTAAAAAAATAAAGDesign primers
2030184TGGTTGATAGTAGTTGATAAGGGTTGACAGDesign primers

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