Microsatellites /Tandem Repeats database

Genome: Streptomyces cattleya NRRL 8057 = DSM 46488

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
212233CATCCGG-CATCCGG-CATCCGG-CATCCGGDesign primers
364492CTACGGCCGTGGCGAGGG-CTACGGCCGTGGCGAGGG-CTACAGCCGTGGCGAGGGDesign primers
491421CGGTCGTCG-CGGTCGTCG-CGGTCGTCG-CGGTCGTCG-CGGTCGTCGDesign primers
491467GGTCGGCGC-GGTCGGCGC-GGTCGGCGCDesign primers
894582GGCTCG-GCCTCG-GGCTCG-GGCTCG-GGCTCG-GGCTCGDesign primers
894619CCTCGGGCTCGGGCTCGG-CCTCGGGCTCGGGCTCGG-GCTCGGGCTCGGGCTCGGDesign primers
1073672CCTCGGTGCCGGACTCCTCGGAGCCGGACTCCTCGGAGCCGGACTDesign primers
1156227GCCCCGACCCCTGGCCGACCCGACCCCTGGCCGACCCGACCCCTGGCCDesign primers
1276152ATCGCACCGCCGGAACGCACCGCCGGAACGCACCGCCGGDesign primers
1407692CCTGGCCGC-CCTGGCCGC-CCTGGCCGCDesign primers
1798955CAAGCC-CAAGCC-GAAGCC-CAAGCC-CAAGCC-CAAGCCDesign primers
2167995GACCCCGGCGGCCCCCGGCGGCCCCCGGCGDesign primers
2260676CGCCGGTTCGCTCGCGCTGGCGGTCAGCGGGTTCGCTCGCGCTGGCGGTCAGCGGGTTCGCTCGCGCTGGCGGTCDesign primers
2322339TGGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGC-GAGCCGCDesign primers
2439736TGTCGGCGGTTTTGTCGACGGTTTTGTCAGCGGTTTTGTCGGCGGTTTDesign primers
2490418GTTCCGCCGCGTACCGCCGCGTTCCGCCGCDesign primers
2513289CGGGGC-CGGGGC-CGGGGC-CGGGGCDesign primers
2613944CCGTCCGCG-CCGTCCGCG-CCGTCCGCGDesign primers
2682774CAACGG-CAACGG-CAACGG-CAACGGDesign primers
2851263TCAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCG-GGAGCCGDesign primers
2997832GTGGGGCGCC-GTGGGGCGCC-GTGGGGGGCCDesign primers
3105139GGCGGCTGATCTCA-CGCGGCTGATCTCA-CGCGGCTGATCTCADesign primers
3154762GCGTACGGG-GCGTACGGG-GCGTACGGGDesign primers
3167710GCTCCG-GCTCCG-ACTCCG-GCTCCG-GCTCCG-GCTCCGDesign primers
3262143GTGCCGGTGGTC-GTGCCGGTGGTC-GTGCTGGTGGTCDesign primers
3267453GAACGGG-CGACGGG-CGACGGG-CGACGGG-CGACGGG-CGACGGG-CGACGGG-CGACGGG-CGACGGGDesign primers
3368632GCGGC-CCGGC-CCGGC-CCGGC-CCGGC-CCGGCDesign primers
3368868TCAGCGGGC-TCAGCGGGC-TCAGCGGGCDesign primers
3562369GACCGACGAGACGACCGACGTGACGACCGACGTGACDesign primers
3600187CGCCGACCCAGA-CGCCGACCCAGA-CGGCGACCCAGA-CGCCGACCCAGADesign primers
3604895GACCAAGCCGTCGACCAGGCCGTCGGCCAAGCCGTCDesign primers
3774213CGGGACCGAGGGCGTCGAGACCGAGGGCGTCGAGACCGAGGGCGTDesign primers
3830399GACTTCTCCGGCAACGACTCCTCCGGCAACGACTTCTCCGGCGACDesign primers
3841556GCTCCG-GCACCG-GCACCG-GCACCG-GCACCG-GCACCGDesign primers
3929992CGGAGC-CGGAGC-CGGAGC-CGGAGCDesign primers
3983386CGCCGGGACCGG-GGCCGGGACCGG-GGCCGGGACCGGDesign primers
4162821CGCCGGGGA-CGCCGGGGA-CGCCGGGGADesign primers
4250028CGGCCCCGC-CGGCCCCGC-CGGCCCCGC-CGGCCCCGCDesign primers
4458391CGCCTGCCCCGCGACGTCTGCCCCGCGACGTCTGCCCCGCGADesign primers
4772179GCCACCGAGGCCCCGGCCGAGACCGCCACCGAGGCGCCCGCCGAGACCGCCACCGAGGCCCCGGCCGAGGGCDesign primers
4896353CCCGGCACCA-CCCGGCACCA-CCCGGCCCCADesign primers
5123019CCCGTGGCGGAGCCATGCCCGTGGCGGTGCCATGCCCGTGGCGGTGCCATGDesign primers
5571718ACGGCGGCGAAGAAG-ACGGCGGCCAAGAAG-ACGGCGGCCAAGAAG-ACGGCGGCGAAGAAGDesign primers
5682173CCCCGGTCGCCGAAGCACCGGTCGCCGAAGCACCGGTCGCCGAAGDesign primers
5699872TGCCGGGGCCC-GGCCGGGGCCC-GGCCGGGGCCCDesign primers
5801113CGTGGTGCACCACACCGTGGTCCACCACACCGTCGTGCACCACACDesign primers
6081118CGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCA-GGCCCGGCADesign primers
6210753CCCGAGTCCGTGCGGCCTC-TCCGAGTCCGTGCGGCCTC-TCCGAGTCCGTGCGGCCTC-TCCGAGTCCGTGCGGCCTCDesign primers
6226458GGCGTGCGTCGGGTCTGTGGCGTGCGTCGGGTCTGCGGTGTGCGTCGGGTCTGTDesign primers
6232985GTGCCCG-GTGCCCG-GTGCCCG-GTGCCCG-GTGCCCGDesign primers
6234953GCTGCGG-GCTGCGG-GCTGCGG-GCTGCGG-GCTGCGGDesign primers
6235154CCGCC-CCGCC-CCGCC-CCGCC-CCGCCDesign primers
6235180CGTCCCGCCT-CGTCCCGCCT-CGTCCCGCCTDesign primers
6235213CCCGG-CCCGG-CCCGG-CCCGG-CCCGGDesign primers
6238074GTGCGGG-CTGCGGG-CTGCGGG-CTGCGGG-CTGCGGG-CTGCGGGDesign primers
6280548CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-ACDesign primers
6281923CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGCDesign primers

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