Microsatellites /Tandem Repeats database

Genome: Streptococcus pyogenes HSC5

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
138414CTTGTTTTAGCTATTTTTAGCTTGTTTAACDesign primers
259440AATAAAAAAGTACAAAAAAAGTAAAAAAAGAGTDesign primers
292676ATCAAACAAAAATCAAAGAAACAACAAAGAAAADesign primers
319931ATGGCAAATAAAGGCAAGTAATGGCTGATADesign primers
726711ACAGCACCAGCAACAGTAGCAGCADesign primers
777381AACTG-TGAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAAC-AAAACDesign primers
796145GCTGCTGCAGCTGCTGGTGGTGCTDesign primers
949191AGTTAAGTGAAGTTAAATTAATTTADesign primers
1068186CTTCATTTTCATCCTCATGTTCATDesign primers
1153261ACTGTCATGCACTGTTATTCACTGTCAATCDesign primers
1159328TTTTACAACTTTGTA-AAATACAACTTTGTA-AAATACAACTTTGTADesign primers
1169946CTTCATCTA-ATTCATCTA-ATTCATCTADesign primers
1343145TTTTCAAACTTTTCAAAGTTTTCAAGCDesign primers
1358210TGTTT-GTTTT-TGTTT-TGTTT-ATTTT-GTTTTDesign primers
1489600TTATTGTCTGTTAGTATTTATTGTTATTTAGTATTTATTTAATGTTAGTATDesign primers
1489662CGAAATTCTAACTTTAGATTTTCTAACTTTAGATTTTCTAACTTTDesign primers
1551859TTC-TTC-ATC-TTC-TTC-ATC-TTC-TTC-GTC-TTCDesign primers
1635867CACCTTGAGCACCTTTTTCACCTTTAGGTCCTTTTTCACCTTTAGGTCCTTTTTDesign primers
1660072ATTTAACCAGT-TATTAACCAGT-TATTAACCAGTDesign primers
1660556TTTTTCTGGTTTAGTTTCTGGTTTTTTGTCTGGTGTDesign primers

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