Microsatellites /Tandem Repeats database

Genome: Borrelia burgdorferi CA382

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
3647AAATAACAATAAAAATATTAATAADesign primers
38027AAAAAAAAAGAATAAAAACAAAAATDesign primers
142864ACTAAAACTAAGAATAAAACTAAADesign primers
160315TTAAAAAAATTGATAAAAATATAAAAATATDesign primers
170725TC-TT-TT-GT-TC-TT-TT-TT-TC-TT-TT-TTDesign primers
210933AAAAAAATAATAAAAATACAAAAAATADesign primers
211343ATTTTATTTTTAATTTTAATATTADesign primers
238609AAATAAATAAAAAAATAAATATATDesign primers
257167AGTTGAAATTGAATTTGAAATTGADesign primers
272586AAAAATAAAAAAAGAAAAAGAAAATDesign primers
273699TAATTATAGTTATCATTATTATTATAACTADesign primers
275080AAAAA-TAAAA-GAAAA-TAAAA-TAAAADesign primers
286051CATTAACCTTAACATTAGCATAAADesign primers
340170AAATAAAAAATTAAAAACAAAAAATACADesign primers
344033AA-AA-AA-GA-AA-AA-AT-AA-AA-AT-AT-AA-ADesign primers
363350GCAACATAAGCAATATAAGCAAAATAADesign primers
396476AAATAAAAAAATTAAAAAATAATADesign primers
421721GGAATTGGGATTGGAGTTGGATTTDesign primers
425237ATAAAATTAAAAATGAAATTAAAADesign primers
431804AAATAATAAAATAAAAAAATAATTDesign primers
587063AATTT-ATTTT-ATTTT-GATTT-TATTTDesign primers
590962TTTAA-ATTAA-ATTAA-ATTAA-ATTAADesign primers
623511TTTTTTTATTTTTATTTGTTTTTTCDesign primers
652013CTTTTATTTCTTTTATTGCTCTTATTTDesign primers
718867ATTTTTATTATTGTTTTTAATTTTDesign primers
741608TTTTTTTCTTTTTATGTTTTTTATTDesign primers
756854AT-TT-TT-AT-AT-TT-AT-TT-CT-TT-TT-TTDesign primers
769550TTGTTTTAAAATTTTTTTAGAATTTTTTTAGAADesign primers
771820TTTCATCTTCATTTTTATTTTCTTDesign primers
771896ATTATTATCATTATTACTATTGTTDesign primers
857523TTTTATTTTTTATTTTTTTTACTTATTTTTDesign primers
865861GAATTTGATTTTGAATATGAAGTTAAATTTDesign primers
888222ATTAAATTATATTGATTTATAATGAATTATDesign primers
905375TTAAATTAATTTAAATAAAATGAAADesign primers

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