Microsatellites /Tandem Repeats database

Genome: Sulfolobus solfataricus

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
31600ATATAGATAATATCGATAATTTAGATADesign primers
120424AGAAGAG-TGAAGAG-AGAAGAG-AGAAGAA-ADesign primers
449976AAAAGAAGAAGAAAAATAAAAAAADesign primers
465375AATAATAATAAGTATAATTATAATDesign primers
506419CCTCTTTCATCCTTTTTCTTACACTTTCATCDesign primers
867367TTATTTATAAGAATTTATAAATATTTTTAADesign primers
879164CTTCTCGTTTCCTCTATTCTCCTCTTCAGTTCCTCTATTCTCCTTATCTTCTCCTCTATTTTCDesign primers
902530TATTTTTTCTTTTTCTAATTTTTCTTCATCTATTTTTACTCTATCDesign primers
1047681TATGATATTATGATAGTATGAAATDesign primers
1048817TTGGTTGAGGATTTGGCTGAGGAGTTGGGTGTGGATTDesign primers
1098894ACT-ACA-ACA-AGT-ACA-ACA-ACT-ACA-ACA-ADesign primers
1116119ACAACTTCAACTACTTCTACTTCAACTACTTCTACTTCAACAACTDesign primers
1160427TTTTCTTATCTTTTCTCTTCTTATCTTCTCDesign primers
1250457AGTGTGAAGTGGGAAGCGTGAAGTDesign primers
1255852ACAGAGA-ATAGAGA-ATAGAGA-ACAGAGA-ACDesign primers
1259066AAAAACTAAAAAATAAAAACTAAAAATTAAAAADesign primers
1369190ATTATGAAAATTATTATGAAAAAGATTATAAAAAATDesign primers
1650665AGTTCTTCTATTCTTTTTGAGTGTTCTTCTAGAATTTTTGAGTGCTCTTCTATTCTTTTAGAAAGTTCTTCTATTCTTTTTGAGTGTTCTTCTAGAATTTTTGAGDesign primers
1650812AGTTCTTCTATTCTTTTTGAGTGTTCTTCTAGAATTTTTGAGTGCTCTTCTATTCTTTTAGAAAGTTCTTCTATTCTTTTTGAGTGTTCTTCTAGAATTTTTGAGDesign primers
1704426CCTAGCCCTATCCCTAGTCCTAGCDesign primers
1850510GCTAGGACTAGGGATAGGGCTAGGDesign primers
2228718AATAAAATTAAAAATATAAGTAAAADesign primers
2264476TTTTTATTTTAATTTTTGTTTTAADesign primers
2537243AATTAGAAGTAGTTAAAAGTAAGCAGAAGTDesign primers
2684739CCCTTTCCGTTTCCCTTTCCATTTCDesign primers
2688255TTGGTTGAGGATTTGGCTGAGGAGTTGGGTGTGGATTDesign primers
2761551TCTCTTCTCCTCTATTATCTTCTTTDesign primers

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