Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus subsp. aureus MRSA252

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
124115	TCCGTTGCCGTCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGGT	Design primers
124261	TTTTGTTGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTGCCAGGTTTTTTGTTGTCTTCTTTACCAGGTTTGTTGCCGTCTTCTTTACCAGGCTTGTTGTTGTCTTCTTTGCCAGGCTT	Design primers
302172	TTAGTATTATTATTTGTATTATTAT	Design primers
336791	GGTGCAAGTGCAGCTGCAGGTGCAG	Design primers
414798	TTGATAAAATTGAAAAAATTAATAAAA	Design primers
463607	GG-AA-AA-TA-GC-AA-AA-TA-GA-AA-AA-TA	Design primers
618562	GACTCAGACAGTGATTCA-GATTCAGATAGCGATTCA-GACTCAGATAGCGATTCA-GACTCAGACAGTGAATCA-GACTCAGACAGCGACTCA-GATTCAGACAGCGACTCA-GACTCAGACAGCGATTCA-GACTCAGATAGCGACTCA-GA	Design primers
618709	TCAGAAAGCGACTCAGACTCAGACAGCGATTCAGACTCAGACAGTGACTCAGATTCAGATAGCGACTCAGATTCAGATAGCGACTCAGACTCAGATAGTGACTCAGACTCAGATAGTGACTCAGACTCAGACAGTGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGACTCAGACTCAGATAGCGATTCAGATTCAGACAGTGACTCAGACTCAGATAGCGATTCAGATTCAGA	Design primers
622381	AGCGATTCAGATTCAGAC-AGTGATTCAGACTCAGAC-AGCGACTCAGACTCAGAC-AGCGACTCAGACTCAGAC-AGTGATTCAGACTCAGAC-AGTGACTCAGACTCAGAC-AGTGATTCAGATTCAGAC-AGCGATTCAGATTCAGAT-AGCGACTCAGATTCAGAC-AGCGATTCAGATTCAGAC-AGTGATTCAGACTCAGAC-AGCGACTCAGATTCAGAC-AGTGATTCAGACTCAGAC-AGCGACTCAGACTCAGAC-AGTGACTCAGATTCAGAT-AGCGACTCAGACTCAGAC-AG	Design primers
622672	GACTCAGACTCAGATAGCGACTCAGATTCAGACAGTGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGATTCGGATAGCGACTCAGA	Design primers
668810	AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AA	Design primers
702872	TAAAGATATTTAAATATTTTTAAAGTTATC	Design primers
711854	AAAATTAATATTAAAAATAAAAAT	Design primers
749058	GAAGTTCGAAAATCGAACGTCCA-GAAGTTCGAAAATCGAACGTCCA-GAAGTTCGAAAATCGAACACTAA	Design primers
749128	GATACTGACTTTAATGACATTGACTTTAATGATACTGAGAATAATGATA	Design primers
890013	TAGTGGTTCAGATTCAGCGAGCGATTCAGATTCAGCAAGTGATTCAGATTCAGCGAGTGATTCAGATTCAGCAAGTGATTCAGATTCAGCGAGTGATTCAGATTCAGCAAGTGATTCAGATTCAGCGAGTGATTCAGATTCAACGAGTGATTCAGATTCAACGAGTGATTCCGATTCAGC	Design primers
890230	AGCGATTCAGATTCAGATAGTGACTCAGACTCAGATAGCGATTCAGATTCCGACAGTGACTCGGATTCAGATAGCGATTCCGACTCAGACAGTGACTCAGATTCAGATAGCGACTCAGACTCAGAAAGCGACTCAGATTCAGACAGCGATTCCGACTCAGATAGTGATTCAGATTCAGACAGCGA	Design primers
890434	TCAGACAGTGACTCAGACTCGGATAGTGAATCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGAATCAGACTCAGACAGTGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGA	Design primers
890620	AGCGATTCCGACTCGGATAGCGACTCAGACTCAGATAGCGATTCCGACTCGGATAGCGATTCAGAATCAGATAG	Design primers
890695	GACTCAGATTCAGATAGCGATTCCGACTCAGATAGCGACTCAGATTCCGACAGCGATTCAGATTCAGACAGTGA	Design primers
890833	GACAGCGATTCAGATTCAGACAGTGATTTAGACTCAGACAGTGACTCGGATTCAGATAGCGATTCCGACTCAGA	Design primers
890913	CTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGAATCAGATAGTGACTCAGATTCAGATAGCGA	Design primers
910679	AAAAGTATAAAAGTTTAAAAGAAT	Design primers
946571	TAATAATAATACTAGTAATAATTA	Design primers
1070719	TAGGTGTTGGTGTAGGCGTAGGTTTAG	Design primers
1148502	GCTTTAACTTCTTTAACTGCTTTAACT	Design primers
1148591	ATTAGCTACTGG-TTTAGCTACTGG-TTTAGCTTCTGG-A	Design primers
1148987	ATAAAATTTAAAATAAAAAATATA	Design primers
1276640	TA-TA-GA-AT-TA-TA-TA-AT-TA-TA-GA-AA-TA	Design primers
1360344	ACTTAATTTAACTTTTCTTAACTGAAC	Design primers
1410000	CTGCTTCTTCTTCGGCTTCTTCTT	Design primers
1476232	ATTTCAATTCATTTAGTTTCATGTCA	Design primers
1827861	TTCTTTTTTTATCTTTTCTATTCTTTT	Design primers
1909345	TTTTTTGACGTTTTTGGTCGTTTCTTGAGGT	Design primers
1978571	TATAATTAAAATAATAATTAAAAT	Design primers
1979193	AATATAATTTAATAAAACATAATCT	Design primers
2041981	TCAGAATAAGCATAAA-AAAGAATAAGCATAAA-AAAGAATGAGCATAAA	Design primers
2061798	ACAATTTAATAAACTTTAATAGAATTTTATA	Design primers
2117492	ATATATACAATATACACAATATACACA	Design primers
2155652	TGTTGATTTGT-TGTTGATTTGT-TGTCCATTTGT-TGTCCATTTGT-TGTTGATTTGT-TGT	Design primers
2180622	TTTGGA-TTCGGA-TTCGGA-TTTGGA-T	Design primers
2180679	TCTGGATCTGGTTTTGGATCCGGAT	Design primers
2337463	TATTTATTTTATATTGTTTTTATAGTTATTTCA	Design primers
2456162	AACTACAACGACTACAACAACTACGACAACTACATCA	Design primers
2481444	ATCAGCATTTCTATGATCAGTACTTCTACGGTCAGCGTTTCTATG	Design primers
2508147	ACTTTATCACCTTTATCAAGTTTATCA	Design primers
2521812	TTTGTATTTTTATTTGTATTTCTA	Design primers
2543068	TTTAAATTAATTTTATGTAATATAA	Design primers
2802352	GAATCGCTGTCTGAATCT-GACTCACTGTCTGAATCT-GACTCACTGTCTGAGTCT-GAATCGCTGTCTGAGTCT-GAATCGCTGTCTGAATCT-GA	Design primers
2802532	GAGTCACTGTCTGAGTCCGAATCGCTGTCTGAATCCGAGTCGCTATCTGAATCCGAGTCACTGTCTGAATCCGA	Design primers
2802607	TCGCTGTCTGATTCTGAATCGCTGTCTGAATCTGAATCGCTATCTGAATCCGAATCGCTGTCTGAATCTGAGTC	Design primers
2802682	CTATCTGAGTTTGAGTCACTATCTGAGTCCGAGTCACTATCTGAGTCCGAGTCACT	Design primers
2802805	TCGCTATCTGAATCTGAGTCACTATCTGAGTCCGAGTCACTGTCTGAATCTGACTC	Design primers
2802877	TCACTATCTGAGTCTGAGTCACTATCTGAATCCGAATCGCTATCTGAACCTGAGTCGCTGTCTGAGCCTGAGTCACTATCTGAATCCGAATC	Design primers
2814812	ATCTAATCCGAATCAATCAAATTCAAATCAATCAAATTCAAATCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

124115

TCCGTTGCCGTCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCATCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGGT