Microsatellites /Tandem Repeats database

Genome: Psychrobacter sp. PRwf-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
18110TCTGGCTA-TCTGGCTA-TCTGGCTADesign primers
63221ATGGCTTATTAACTA-TTGGCTTATTAACTA-TTGGCTTATTAACTA-TTGGCTTATTAACTADesign primers
70624TATCTAG-TATCTAG-TATCTAG-TATCTAG-TATCTAGDesign primers
87954ACTGATAGATAGCACTGATAAATAGCACTGATAGATAGADesign primers
127961CTAATCATAAGCCTACTAATCATAAGCTTACTAATCATAAGCCTADesign primers
128007CAATCATGAGCCTAC-CAATCATGAGCCTAC-CAATCATGAGCCTAGDesign primers
142413ATAATTAAATGAATAATTAAATAAAGAATTAAATGADesign primers
206215ATAGATAATAACTG-GTAGATAATAACTG-GTAGATAATAACTGDesign primers
263488ATTTAGCTA-ATTTAGCTA-ATTTAGCTADesign primers
326216GCTAAGCA-GCTAAGCA-GCTAAGCADesign primers
415218TTGTGG-TTGTGG-TTGTGG-TTGTGGDesign primers
415343ATGTTAAAGCAAAAAAGGTTAAAGCAAAAAAGGTTAAAGCAAAAADesign primers
425305GACTTAAAC-GACTTAAAC-GACTTAAACDesign primers
490146TTTTTGTCTGGTTTTTATCTGGTTTTTGTCTGGDesign primers
546741GTCAGGTGCAAA-GTCAGGTGCAAA-GTTAGGTGCAAADesign primers
594880CTATTTAGCGACAGCGAACA-CATTTTAGCGACAGCGAACA-CATTTTAGCGACAGCGAACA-CATTTTAGCGACAGCGAACADesign primers
595318TCATAGTATTTTTGATCATGGTATTTTTGATCATAGTATCTTTGADesign primers
603787GCTGACAACAATGCTGACAACAAGGCTGACAAAAATDesign primers
781617ATAATCATTTATAA-ATAATCATTTATAA-ATAATCACTTATAADesign primers
919896TTAGGA-TTAGGA-TTAGGA-TTAGGA-TTAGGADesign primers
1019252TAAAGATAAA-AAAAGATAAA-AAAAGATAAADesign primers
1064824TTGT-TTAT-TTAT-TTAT-TTAT-TTAT-TTAT-TTAT-TTATDesign primers
1147631AAGTCTAATAAAGACTAATAAAGTCTAAAADesign primers
1198435CTTAGATAA-CTTAGATAA-CTTAGATAADesign primers
1198463TTACATAAC-TTACATAAC-TTACATAAC-TTACATAACDesign primers
1204440ATAACAGTAA-ATAACAGTAA-ATAACAGCAADesign primers
1244029AATC-AATT-AATC-AATC-AATC-AATC-AATC-AATC-AATCDesign primers
1287368AGTACCAGTATCAGTATCAGTATCAGTGCCAGTATCDesign primers
1297599TAAGTTTATCTAAGCATAAGTTTATCTAGGCATAAGTTTATCTAGGCADesign primers
1338417TTGGTATTTATATGGTATTTATTTGGTGTTTATDesign primers
1791646TCTATGCTT-TCTATGCTT-TCTATGCTT-TCTATGCTTDesign primers
1849533GCCTTTTCAGCAGCGGCCCTTTCAGCAGCGGCCCTTTCAGCAGCGGCCTTTTCAGCAGCGGCCTTTTCAGCAGCADesign primers
1849747TTTTTGGCTCAG-GTTTTGGCTCAG-GTTTTGGCTCAGDesign primers
2168835AGATACGAAAACAGATACGACAACAGATACGACAACDesign primers
2241386CGCCCAAGTC-GGCCCAAGTC-GGCCCAAGTCDesign primers
2353898TGTTTATAGCG-TGTTTATAGCG-TGTTTATATCGDesign primers
2393147TAAATAGGT-TAAATAGGT-TAAATAGGT-TAAATAGGTDesign primers
2395474ACTGAAGCAGTTAAG-CCTGAAGCAGTTAAG-CCTGAAGCAGTTAAG-CCTGAAGCAGTTAAGDesign primers
2423660TTCACCACCGGTTCCATTATCGGTGTCACCACCTGTTCCATTATCGGTGTCACCACCGGTTCCGTTATCGGTGTCACCACCGGTTCCATTACCGGTDesign primers
2423757TCGCCACCGTTTCCATTACCGGTT-TCGCCACCGTTTCCATTACCGGTT-TCGCCACCGTTTCCATTACCGGTTDesign primers
2425164GTTTCAGTATCCGGG-TTTTCAGTATCCGGG-TTTTCAGTATCCGGGDesign primers
2425239GTTTCAGTATCCGGG-GTTTCAGTATCCGGG-GTTTCAGTATCTGGGDesign primers
2425285TTTCAGTATCTGGTG-TTTCAGTATCTGGTG-TTTCAGTATCTGGTG-TTTCAGTATCTGGTGDesign primers
2425346TTCAGTATCCGGGGTTTCAGTATCTGGGGTTTCAGTATCCGGGGTTTCAGTATCTGGGGTTTCAGTATCCGGGGTTTCAGTATCTGGGGTTTCAGTATCCGGGGTTTCAGTATCTGGGGTTTCAGTATCTGGGGTTTCAGTATCTGGGGTTTCAGTATCTGGGGTDesign primers
2549350TCAATTTCTGGCTCAATAGTT-TCAACTTCAGGCTCAATAGTT-TCAACTTCAGGCTCAATAGTT-TCAACTTCAGGCTCAATAGTTDesign primers
2586165GCTTATCTGAAGTAACTAGCTTATATGAAGTAACTAGCTTATATGAAGTAACTADesign primers
2769031ACAGCTGAAAATAGTACTACAGCTGAAAATAGTGCTACAGCTGAAAATAGTACCDesign primers
2879349ATGCCAAAAACTAAATGCCAAAAAGTAAATGCCAAAAACTAADesign primers
2888734CTGATA-CTGATA-CTGATA-CTGATADesign primers
2914796GAACACGAACATGAC-GAACACGAACATGAC-GAACACGACCATGACDesign primers
2947636TTCTTTTAGCTTAGTATGCTTTTAGCTTAGTATGCTTTTAGCTTAGTADesign primers
2950227GTCATTGATGGC-TTCATTGATGGC-TTCATTGATGGCDesign primers
2970118CGCCCAGT-CGCCCAGT-CGCCCAGTDesign primers

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