Microsatellites /Tandem Repeats database

Genome: Actinobacillus pleuropneumoniae serovar 7 str. AP76

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
44261GGACGGCGGCGACGGCGGTGACGGCGGDesign primers
71097ATAAAATTTGAAAATATTTGAAAACATTTGDesign primers
87140TTTGGTTTTTCCTTAGGCTTTTCCTTCGGTTTTTCTDesign primers
288073ATAAAATTTGAAAATATTTGAAAACATTTGDesign primers
291325TCATTCTTTGTTCATTCATTCTTCATTTTTTCTDesign primers
293072CAAAATTTCGTAAAATTTTGCAAAAATTAGDesign primers
330510GAGCTGGAAGCT-ACGCTGGAAGCT-ACGCTGGAAGCTDesign primers
344533TAAAAGCTGAAAAAGAGGCTAAAGAAAAGGCTGAAAAAGAAGCTAAAGCTAAGGCTGAGAAAGAGGCTAAAGDesign primers
377487TTTTTG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGG-AGCTGGDesign primers
380067ATAAATTTGTAAAAATTTATCTAAATTTGADesign primers
386533AGCCGCCGCCAAAGCCGCCCCCGAATCCTCCGCCAADesign primers
523085ACACCTCAGCGTTGCCGT-ACACCCGAGCGTCGCCGT-ACACCCGAGCGTTGCCGT-ACACCCGAGCGTCGCCGT-ACACCCGAGCGTCGCCGT-ACACCCGAGCGTTGCCGTDesign primers
523194CATCCGAGCGTCGCCGTACACCCAAGCGTTGCCGTACACCCGAGCGTCGCCGTACACCCAAGCGTTGCCGTACACCCGAGCGTCGCCGTACACCCAAGCGTTGCCGTACACCCGAGCGTCGCCGTACACCCGAGCGTCGCCGTACACCCGAGCGTCGCCGTACACCCGAGCGTCGCCGTACACCCAAGCGTTGCCGTACATCCGAGCGTCGCCGTACACCCAAGCGTTGCCGTACACCCGAGCGTCGCCGTACACCCAAGCGTTGCCGTACACCCGAGCGTCGCCGTACACCCAAGCGTTGCCGTACACCCGAGCGTCGCCGTACACCCGAGCGTCGCCGTACACCCGAGCGTTGCCGTACACCCGAGCGTTGCCGTADesign primers
535019TAGTAATTCATAGTAGTTGATAGTAGTTCADesign primers
589930ATATAAAATAATAGAAAATAGTATADesign primers
608734TGAAATTGCAATTGAAAATGAAAADesign primers
708239AAATGAATTGAAATTAACTGAAAAGDesign primers
843624GTGCA-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGC-TGTGCDesign primers
927420GGTGCTGGTGCAGCTGCTTGTGCTDesign primers
1362820CTTCCGTTTTTTCTACTTCTGCTTTTTCCACTTCCGTTTTCTCCGCTTCTGTCTTTGCTADesign primers
1370307TTAGGTTGATCTTGCTTTGGTTGCTCCTGCTTAGGTTGGTCTTGCTTTGGTTGGTCTTGCTTTGGTTGGTCTTGCTTTGGTTGGTCTTGCTTAGGTTGGTCTTGCTTTGGTTGGTCTTGCTTTGGTTGCTCCTGCTTAGGTTGGTCTTGCTTTGGTTGCTCCTGCTTAGGTTGGTCTTGCTTTGGTTGGTCTTGCTTTGGTTGCTCCTGCTTAGGTTGGTCTTGCTTTGGTTGCTCCTGCTTTGGTTGCTCCTGCTTAGGTTGCTCCTGCTTAGGTTGCTCCTGCTTAGGTTGGTCTTGCTTTGGTTGCTCCTGCTTAGGTTGCTCCTGCTTAGGCTGCTCCTGCDesign primers
1440271TTT-TAT-TCT-ATT-TTT-TCT-TAT-TTT-TDesign primers
1591152CTCAAATGTTTTCAAATATTTTCAAATTTTDesign primers
1646591TT-CT-AA-TT-TT-TG-CT-AT-TT-TT-CT-CT-AT-TT-TTDesign primers
1663043TCATGATCATGGTGATGATCATGCDesign primers
1785291CTCAAATGTTTTCAAATATTTTCAAATTTTDesign primers
1833590AA-AT-AA-AA-AA-AT-AT-AA-AA-AG-AA-AADesign primers
1897612CTCAAATGTTTTCAAATATTTTCAAATTTTDesign primers
1977644CAGCAGCGGCAGCAGTAGCGGCAGDesign primers
2124475ATAAAATTTGAAAATATTTGAAAACATTTGDesign primers
2226922TGT-TCG-TCT-TCT-TCG-TCT-TCT-TCG-TCTDesign primers

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