Microsatellites /Tandem Repeats database

Genome: Staphylococcus pseudintermedius ED99

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
50524AAGATAAAGCTAAAGACAAAGACADesign primers
85402TATTT-TATTT-TTTTT-TATTA-TTTTTDesign primers
191525TCAACATCAGCATCTACATCAGCATCTACATCTACADesign primers
191792ACATCAGCAAGTGAATCAGCAAGTACAGAAGCAAGTDesign primers
241020ATGAACATGGTGAGCACGAAGAACATGGTGAACATGAAGAACACGGTGAGCATGAAGAACATGGTGAGCATGDesign primers
296187ATATTAATTATATAAATTATATTAAATDesign primers
454156TCCAAATGCAAATTCAAATCAAAADesign primers
515901AAAGACAATAAAGCGAAAGACAGCAAAGAGAAGGACAACAAAGCADesign primers
637625GTTGTTCAATTTGTTCAAGTTGTTGAADesign primers
672023TGTTTATAAATGATTAAAAATGTTTATATTDesign primers
740596ATGGGTATTGGTATGAGTATGGGTDesign primers
777933ATTAAAATAAAAATTAAAATTTAADesign primers
842898AAAAAAACTAAAAAACCTAAAAATACTDesign primers
1104223AAAAAGAAAAACAAAATAAACAAAADesign primers
1543286TGATTGTTGCCTTGTTTTTGGTTGTTACCTTGTTTTTGGTTTTTACCTTGTTTTDesign primers
1592913TTGGGAAA-ATGGGAAA-ATGGGAAADesign primers
1728537TTGCTCGACATTTCTTGACATCGCTCGACTDesign primers
1729993TATCTTTATATTTTTCTTTATCATDesign primers
1737019CTG-CTG-GTG-CTG-ATG-CTG-CTG-GTGDesign primers
1850220TTGTGAT-TTGTGAT-AAGTGAT-TTGTGAT-AAGTGAT-TTGTGATDesign primers
2019619TGTTGCTGCTGCTGTTGTTGTTGACGTTGCDesign primers
2048072AATGTTAGAAATGTTAAAAAAGTTAGADesign primers
2069795CTTTCACTTAGTGATTCGCTTTCACTGATTGATTGGCTTTCACTTAATGATTCGDesign primers
2070125CTTAGTGATTCGCTTTCACTGATTGATTGGCTTTCACTTAATGATTCGCTTTCTDesign primers
2071313CTTAGTGATTCGCTTTCACTGATTGATTGGCTTTCACTTAATGATTCGCTTTCTDesign primers
2071415CTTTCACTTAGTGATTCGCTTTCACTAACTGATTGGCTCTCACTTAATGATTCADesign primers
2071601CTTAGTGATTCGCTTTCACTGATTGATTGGCTTTCACTTAATGATTCGCTTTCTDesign primers
2072141CTTAGTGATTCGCTTTCACTGATTGATTGGCTTTCACTTAATGATTCGCTTTCTDesign primers
2072423CTTTCACTTAATGATTCGCTTTCACTGATTGATTGG-CTCTCACTTAATGATTCGCTTTCACTGATTGATTGG-CTCTCACTTAGTGACTCGCTTTCACTAACTGATTGGDesign primers
2119011CATATTCAAATTGATATTGATATTDesign primers

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