Microsatellites /Tandem Repeats database

Genome: Bordetella parapertussis Bpp5

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
457715CGCCGG-CGCCGG-CGCCGG-CGCCGGDesign primers
727562GGCGGCCAC-GGCGGCCAC-GGCGGCCACDesign primers
733998GCTGGC-GCTGGC-GCTGGC-GCTGGC-GCTGGCDesign primers
848331CAAGGG-CAAGGG-CAAGGG-CAAGGGDesign primers
848356AAGGAC-AAGGAC-AAGGAC-AAGGAC-AAGGACDesign primers
973748TTTTGTTCG-TTTTGTTCG-TTTTGTTCGDesign primers
1654739GCCGCCCGA-GCCGCCCGA-GCCGCCCGADesign primers
1751162GGCAGCGTCCCA-GGCAGCGTCCCA-GGCAGCGTCCCADesign primers
1751220CTGGCAGCGGCC-CTGGCAGCGGCC-CTGGCAGCGGCCDesign primers
1752439CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTADesign primers
2116658TCGCAG-TCGCAG-TCGCAG-TCGCAGDesign primers
2259121CTGGCAGCGGCC-CTGGCAGCGGCC-CTGGCAGCGGCCDesign primers
2260460CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTADesign primers
2260631GGCCAGGTTCGCGCG-GGCCAGGTTCGCGCG-GGCCAGGTTCGCGCGDesign primers
2628855CTGGTG-CTGGTG-CTGGTG-CTGGTGDesign primers
2777733ACCCCGTCC-ACCCCGTCC-ACCCCGTCCDesign primers
2801145GGCCGGCCGCGATATCCA-GGCCGGCCGCGATATCCA-GGCCGGCCGCGATATCCADesign primers
2936469CTTGGG-CTTGGG-CTTGGG-CTTGGGDesign primers
3467270CTTGTTTTTCC-CTTGTTTTTCC-CTTGTTTTTCC-CTTGTTTTTCCDesign primers
3467315TTGCTTTTCGC-TTGCTTTTCGC-TTGCTTTTCGCDesign primers
3675874CCTGG-CCTGG-CCTGG-CCTGG-CCTGGDesign primers
3709608GGCTCA-GGCTCA-GGCTCA-GGCTCA-GGCTCA-GGCTCA-GGCTCA-GGCTCA-GGCTCA-GGCTCA-GGCTCADesign primers
3782536GCGCCCAGC-GCGCCCAGC-GCGCCCAGCDesign primers
3823811GCGGGT-GCGGGT-GCGGGT-GCGGGTDesign primers
3960945GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCADesign primers
4024949GCCTCGCCG-GCCTCGCCG-GCCTCGCCGDesign primers
4117662GGCGGCATG-GGCGGCATG-GGCGGCATGDesign primers
4140162CGCCGA-CGCCGA-CGCCGA-CGCCGA-CGCCGA-CGCCGA-CGCCGADesign primers
4281014GTAGCCAAGAAAGCC-GTAGCCAAGAAAGCC-GTAGCCAAGAAAGCC-GTAGCCAAGAAAGCC-GTAGCCAAGAAAGCC-GTAGCCAAGAAAGCC-GTAGCCAAGAAAGCCDesign primers
4361674GCGCCGGT-GCGCCGGT-GCGCCGGT-GCGCCGGT-GCGCCGGT-GCGCCGGTDesign primers
4367935TGGCCGCGC-TGGCCGCGC-TGGCCGCGCDesign primers
4807009TTTACG-TTTACG-TTTACG-TTTACGDesign primers

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