Microsatellites /Tandem Repeats database

Genome: Bordetella parapertussis Bpp5

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
457715CGCCGG-CGCCGG-CGCCGG-CGCCGGDesign primers
727562GGCGGCCAC-GGCGGCCAC-GGCGGCCACDesign primers
733998GCTGGC-GCTGGC-GCTGGC-GCTGGC-GCTGGCDesign primers
763677CAGGGCGCTGAACAGGGCGGTGAACAGGGCGGTGAADesign primers
848331CAAGGG-CAAGGG-CAAGGG-CAAGGGDesign primers
848356AAGGAC-AAGGAC-AAGGAC-AAGGAC-AAGGACDesign primers
973748TTTTGTTCG-TTTTGTTCG-TTTTGTTCGDesign primers
1502534TTCAGACTCAGGTTCAGATTCAGGCTCAGACTCAGGDesign primers
1654739GCCGCCCGA-GCCGCCCGA-GCCGCCCGADesign primers
1751030GGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGTCCCAGGCAGCGGCCCTGGCAGCGGCACTGGCAGCGGCCCTGGCAGCGGCCCTGGCAGCGGCACTGGCAGCGGCCCTGGCATCGGCACTGGCAGCGGCCCTGGCAGCGTCCCADesign primers
1751194CCCAGGCAGCGG-CCCTGGCAGCGG-CACTGGCAGCGG-CCCTGGCAGCGG-CCCTGGCAGCGG-CCCTGGCAGCGG-CACTGGCAGCGG-CCCTGGCAGCGGDesign primers
1751306GGCAGCGTACCAGGCAGCGTCCCAGGCAGCGTCCCADesign primers
1751414GGCAGCGGCACTGGCATCGGCACTGGCAGCGGCCCTGGCAGCGGCACTDesign primers
1752303TCGCGCCGGCCAGGTTCGCGCGGGCCAGGTACGCGCCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTCCGCGCCGGCCAGGTCCGCGCCGGCCAGGTTCGCGCAGGCCAGGTTCGCGCGGGCCAGGTDesign primers
1752439CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTADesign primers
1752504CGGCCAGGTTCGCGC-CGGCCAGGTTCGCGC-GGGCCAGGTTCGCGC-GGGCCAGGTTCGCGCDesign primers
1752594CGGCCAGGTTCGCGC-CGGCCAGGTTCGCGC-CGGCCAGGTCCGCGC-GGGCCAGGTTCGCGCDesign primers
2116658TCGCAG-TCGCAG-TCGCAG-TCGCAGDesign primers
2259095CCCAGGCAGCGG-CCCTGGCAGCGG-CACTGGCAGCGG-CCCTGGCAGCGG-CCCTGGCAGCGG-CCCTGGCAGCGGDesign primers
2259227CCCAGGCAGCGG-CCCTGGCAGCGG-CACTGGCAGCGG-CCCTGGCAGCGG-CCCTGGCAGCGG-CACTGGCAGCGG-CCCTGGCAGCGG-CACTGGCAGCGGDesign primers
2259327GGCAGCGTACCAGGCAGCGTCCCAGGCAGCGTCCCADesign primers
2259435GGCAGCGGCACTGGCATCGGCACTGGCAGCGGCCCTGGCAGCGGCACTDesign primers
2260324TCGCGCCGGCCAGGTTCGCGCGGGCCAGGTACGCGCCGGCCAGGTTCGCGCCGGCCAGGTTCGCGCGGGCCAGGTCCGCGCCGGCCAGGTCCGCGCCGGCCAGGTTCGCGCAGGCCAGGTTCGCGCGGGCCAGGTDesign primers
2260460CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTA-CGCGTCGGCCAGGTADesign primers
2260525CGGCCAGGTTCGCGC-CGGCCAGGTTCGCGC-GGGCCAGGTTCGCGC-GGGCCAGGTTCGCGCDesign primers
2260615CGGCCAGGTTCGCGC-CGGCCAGGTTCGCGC-GGGCCAGGTTCGCGC-GGGCCAGGTTCGCGC-GGGCCAGGTTCGCGCDesign primers
2260720CGGCCAGGTTCGCGC-CGGCCAGGTTCGCGC-CGGCCAGGTCCGCGC-GGGCCAGGTTCGCGCDesign primers
2552863GCCATGGTCGTGGGCATGGTCGTGGGCATGGTCGTGDesign primers
2572055GCGGGGACAGGCACCTCTGCCGCAGCGGGGACAGGCACCCTTGCCGCAGCGGGGACAGGCACCCTTGCCGCADesign primers
2628855CTGGTG-CTGGTG-CTGGTG-CTGGTGDesign primers
2777733ACCCCGTCC-ACCCCGTCC-ACCCCGTCCDesign primers
2801144CGGCCGGCCGCGATATCC-AGGCCGGCCGCGATATCC-AGGCCGGCCGCGATATCCDesign primers
2936469CTTGGG-CTTGGG-CTTGGG-CTTGGGDesign primers
3341510CCTGCTTGGCGGGTT-CCTGCTTGGCGGGTT-CCTGCTTGGCGGGCTDesign primers
3467269TCTTGTTTTTC-CCTTGTTTTTC-CCTTGTTTTTC-CCTTGTTTTTCDesign primers
3467314CTTGCTTTTCG-CTTGCTTTTCG-CTTGCTTTTCGDesign primers
3675874CCTGG-CCTGG-CCTGG-CCTGG-CCTGGDesign primers
3709604CGCTGG-CTCAGG-CTCAGG-CTCAGG-CTCAGG-CTCAGG-CTCAGG-CTCAGG-CTCAGG-CTCAGG-CTCAGG-CTCAGGDesign primers
3781771GCACCGCCGGGAACCGCACCGCCTGGAACCGCACCGCCTGGAACCDesign primers
3782536GCGCCCAGC-GCGCCCAGC-GCGCCCAGCDesign primers
3823811GCGGGT-GCGGGT-GCGGGT-GCGGGTDesign primers
3960945GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCADesign primers
4024949GCCTCGCCG-GCCTCGCCG-GCCTCGCCGDesign primers
4117662GGCGGCATG-GGCGGCATG-GGCGGCATGDesign primers
4140160GCC-GCC-GAC-GCC-GAC-GCC-GAC-GCC-GAC-GCC-GAC-GCCDesign primers
4281011GCTGTAGCCAAGAAA-GCCGTAGCCAAGAAA-GCCGTAGCCAAGAAA-GCCGTAGCCAAGAAA-GCCGTAGCCAAGAAA-GCCGTAGCCAAGAAA-GCCGTAGCCAAGAAADesign primers
4281117CCGTAGCCAAGAAGGCCGTCGCCAAGAAGGCCGTCGCCAAGAAGGDesign primers
4361673CGCGCCGG-TGCGCCGG-TGCGCCGG-TGCGCCGG-TGCGCCGG-TGCGCCGGDesign primers
4367935TGGCCGCGC-TGGCCGCGC-TGGCCGCGCDesign primers
4794474GCAATGGCTGGCGCAACGGCTGGCGCAACGGCTGGCDesign primers
4807009TTTACG-TTTACG-TTTACG-TTTACGDesign primers

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