Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes strain C1-387

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
24554AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
180334TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
260738AA-AA-AA-TA-AA-AA-AA-GA-AA-TA-AA-TA-ADesign primers
431541AGAACAAAAACAACAACAAGAAAADesign primers
462899AAAAAGAAGAAGAAAACGAAACAGDesign primers
535013ATAAA-ATAAA-CTAAA-ATAAA-ATATADesign primers
604570ATAAAAGAAATAAAACAAATACAAGAADesign primers
624168TCCAGTAGATCCGGTAGATCCGGTAGADesign primers
624196CCGGTAGAC-CCGGTAGAC-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCGGTAGAT-CCAGTAGAC-CCGGTAAAC-CCGGTAGATDesign primers
728576GAGCAAATTTAAGAGGTGCAAATTTAAGTAATGCAGATTTAAGAGGAGCAGATTTAAGAGGAGCAGATTTAAGTADesign primers
728654CAGGTTTAAGAGATGCAAGTTTAAAAGATGCAGATTTAAGTAATGCATGTTTAAGAGGAGCAGATTTAAGTAATGCATATTTAAGAGGTGDesign primers
1139585GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
1202309CT-TT-TT-TT-AT-TT-TT-TT-CT-TT-GT-TTDesign primers
1364813GCATCAGCGTCA-GCATCAGCGTCA-GCATCGGCATCG-GCATCAGCGTCA-GCATCGGCATCC-GCATCCGCATCC-GCATCADesign primers
1365254TCAGCGTCAGCATCCGCATCGGCATCTGCATCCGCATCCGCATCCGCATCGGCGTCAGCATCCGCATCGGCGDesign primers
1365350TCCGCA-TCGGCA-TCAGCG-TCGGCA-TCAGCA-TCGGCA-TCTGCA-TCTGCA-TCTGCA-TCCGCADesign primers
1365411CGGCGT-CAGCAT-CGGCAT-CGGCGT-CAGCAT-CAGCAT-CCGCAT-CGGCAT-CAGCGT-CAGCAT-CGGCGT-CGGCAT-CAGCGT-CAGCGT-CCGCAT-CGGCATDesign primers
1365526AGCGTCGGCATCCGCATCCGCATCGGCATCTGCATCCGCATCCGCATCAGCGTCGGCATCAGCGTCAGCATCGGCGTCAGCATCTGCATCGGCATCAGCGTCAGCATCCGCATCAGCGTCDesign primers
1365668TCAGCATCCGCATCAGCGTCAGCADesign primers
1365693CGGCGTCAGCATCAGCGTCGGCGTCAGCATCCGCATCAGCGTCAGCATCAGCGTDesign primers
1365748GGCATC-CGCATC-CGCATC-CGCATCDesign primers
1365776TCAGCATCCGCATCCGCATCCGCATCAGCGTCAGCADesign primers
1365815GCGTCAGCATCAGCGTCGGCGTCADesign primers
1365860TCAGCATCCGCATCAGCGTCAGCADesign primers
1365885CGGCGTCAGCATCAGCGTCGGCGTCAGCATCCGCATCAGCGTCAGCATCAGCGTDesign primers
1365940GGCATCGGCGTCAGCATCCGCATCGGCATCDesign primers
1365974TCAGCATCGGCATCCGCATCAGCGTCCGCATCGGCATCAGCGTCAGCATCGGCATCCGCATCGGCATCCGCATCGGCADesign primers
1366053CGGCGTCAGCATCCGCATCAGCGTCAGCATCCGCATCGGCATCAGCGTCCGCATCAGCGTCGGCATCCGCATDesign primers
1366126CGCATC-GGCATC-AGCGTC-GGCATC-CGCATC-CGCATC-GGCATC-CGCATCDesign primers
1366175GCGTCAGCATCCGCGTCAGCATCGGCGTCAGCATCCDesign primers
1366212CATCAG-CGTCAG-CATCAG-CATCAG-CATCAGDesign primers
1366243GTCGGCGTCAGCATCCGCATCAGCATCAGCATCCGCATCCGCATCAGCGTCGGCGTCAGCATCCGCATCAGCDesign primers
1366316TCAGCATCCGCATCAGCGTCAGCATCCGCATCAGCGDesign primers
1366353CGGCGTCAGCATCCGCATCAGCGTCGGCATCCGCATCAGCGTCGGCATCCGCGTDesign primers
1366408AGCATCGGCGTCAGCATCCGCATCGGCATCAGCGTCAGCATCGGCGTCAGCATCCGCATCCGCATCGGCATCCGCATCAGCGTCGGCATCGGCATCDesign primers
1366505GCATCC-GCATCC-GCATCG-GCATCADesign primers
1366532TCAGCATCGGCATCCGCATCAGCGTCCGCATCAGCGTCAGCADesign primers
1366577GCGTCAGCATCCGCATCCGCGTCAGCATCCGCATCAGCGTCGGCGTCAGCATCCGCATCAGCATCCGCATCCGCGTCGGCGTCAGCATCCGCATCAGCGTCAGCATCCGCGTCAGCATCAGCGTCADesign primers
1366704CATCCG-CATCAG-CGTCAG-CATCCG-CGTCAG-CATCAG-CGTCAG-CATCCG-CATCAG-CGTCAG-CATCCG-CATCCG-CATCCG-CATCCG-CATCAG-CGTCAG-CATCCG-CATCCG-CATCGG-CATCAG-CATCCG-CATCCG-CATCCG-CATCCGDesign primers
1366849ATCAGCGTCGGCATCCGC-ATCAGCGTCGGCATCCGC-ATCGGCATCAGCATCCGC-GTCAGCGTCGGCATCAGCDesign primers
1366922TCAGCA-TCGGCG-TCAGCA-TCCGCA-TCGGCA-TCCGCA-TCCGCA-TCGGCA-TCCGCADesign primers
1367033GCGTCAGCATCCGCATCCGCATCCGCATCAGCGTCGGCATCGGCATCCGCATCGGCATCCGCATCAGCGTCCGCATCAGCGTCGGCATCGGCATCCGCATCCGCATCCGCATCCGCATCCDesign primers
1367174TCAGCATCGGCATCCGCATCCGCATCCGCATCAGCGTCAGCATCGGCATCCGCATCAGCGTCCGCATCAGCGTCGGCATCGGCATCCGCATCCGCATCCGCATCCGCADesign primers
1367301CAGCAT-CGGCAT-CCGCAT-CCGCAT-CCGCAT-CCGCATDesign primers
1367338GGCATCAGCGTCAGCATCGGCATCCGCATCAGCGTCAGCATCAGCGTCAGCATCDesign primers
1367396TCAGCA-TCGGCG-TCAGCA-TCCGCA-TCCGCG-TCGGCG-TCAGCA-TCCGCA-TCAGCA-TCCGCA-TCCGCG-TCGGCG-TCAGCA-TCCGCADesign primers
1367481CAGCGTCAGCATCCGCAT-CAGCGTCAGCATCCGCAT-CAGCGTCAGCATCCGCAT-CAGCGTCAGCATCCGCAT-CAGCGTCAGCATCCGCATDesign primers
1367579GCGTCA-GCATCC-GCATCG-GCGTCA-GCATCG-GCATCC-GCATCA-GCGTCA-GCATCC-GCATCA-GCATCA-GCGTCADesign primers
1596759TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
1842069CAGAATCAAAATCATAATCAGAAGDesign primers
1885652CATCTGTTGTTCGTTTGTTGTTCGTCTGTTGTTDesign primers
1903425TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2132446ATC-ATC-ATC-ATC-TTC-ATC-TTC-ATCDesign primers
2135059CTAATTCTGATTCTAATTGTAATTDesign primers
2260768CACTAA-CACTAA-CACGAA-CGCTAADesign primers
2523774AAACAGCAAAAGAAACTGAAAAAGAAACAACAAAAGDesign primers
2624413TCATCATCGTCATCAGCATCATCADesign primers
2975482ATTGTTTTAATTTTTTTAATTGTTTTADesign primers

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