Microsatellites /Tandem Repeats database

Genome: Escherichia coli PMV-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
77401GCAGCAACAGCAGCAGCGCCAGCADesign primers
543948ATATCAATACCAATATCCATTTCADesign primers
566984ATTCTGACCCGTCAA-AATCTGACGCATCAA-AATCTGACGCATCAA-AATCTGACCCGTCAADesign primers
777141AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
1055780ATTCTGTTCA-TATCTGTTCA-TATCTGTTCADesign primers
1406820GACAGATAAAGA-TACAGATAAAGA-TACAGATCAAGADesign primers
1930358CGGGATCGGCATCGGCATCGGGTTDesign primers
2031008ACC-AGC-ACC-ACC-AGC-AGC-ACC-ACCDesign primers
2168308AACAACAG-ATACACAG-ATACACAG-ATACACAG-ATACACAG-ATACACAG-ATACACAG-ATACACAGDesign primers
2451990TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
2602493AAACGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAG-TCTTGAGDesign primers
2976321ATTTTGACGGGGCAGATTTTGATGCGTCAGATTTTGACGGGTCAGDesign primers
3139487GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3404910CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3568894TGCACGACCAGCACGACCTGCACGACCDesign primers
3737973GTCGTG-GTCGTG-ATCGTG-GTGGTG-ATCGTGDesign primers
3756929TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
4249639CGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGCDesign primers
4378107AATGCCAATGGCGATGCCAATTCCDesign primers
4550338TACAGAGAATACAACAGAGATTACTACAGAGAATAADesign primers
4717654ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
4856880AATTGCTTTAAGTGGCTTTAAATGACTTTADesign primers
4961975AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers
4964244AATCTATTCAAGTATCTATTCACGAATCTATTCATTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.