Microsatellites /Tandem Repeats database

Genome: Acetohalobium arabaticum DSM 5501

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
23053TTTAATTTTAAACTTAATTTTAATDesign primers
72282CGATGGAAATGGCAACGGAAATGGCAATGGAAATGADesign primers
293660GGATGAAGATGAGGAAGAGGATGADesign primers
479768TTTAATATAATTTGATTTAATTTATDesign primers
507446GGAAGGAAGCTATTATTATAGAGTATAAAGCTATTATTATAGAGTATAAAGCTATTATTATAGDesign primers
511545TTTATTGTT-TTTATTGTT-TTTATAGTTDesign primers
530161ATTAACATATATCTAACATATAGTTTACATATADesign primers
562014TTATTTTAATATATTTCATTTAATTDesign primers
623308TAATTATTTATAATTATTATTTATGATTTADesign primers
756798ATGAGATAATACGGGATAATATGTAATAATDesign primers
760912ATTATATAATATAATAATATATTAGDesign primers
1067623GAAGTAATGAAGTAGTGAAGTTATDesign primers
1121634AGAAGAGTCAGGATAAAAGTCAGGAGAAGAGTCAACDesign primers
1136039ATTAATT-ATTAAGT-ATTAAGT-ATTAATTDesign primers
1236711TTCTACAAGAAGATCTAGAAGAAGTTCTAGAAGAATDesign primers
1378967AAAAATAAAAAGAAATATTAAAATDesign primers
1514896ATCATCATCAGCATCATCATTATCDesign primers
1515798CTAAAACTAATACTAAAGCTAATADesign primers
1563174ATATTCTCTTTTGATTCATTATTTCCTTTTGATTCATTATTTCCTTTTGATTCADesign primers
1593282TAAAATTAACATCAAAATTAAAATDesign primers
1668819TCTTCTTCAGCTTCTTCATCTTCCTCADesign primers
1683287TTAATAACATTTAGTACCATTTAATCACCTDesign primers
1813108TAAATTATATCTTTATTATATCTTTATTATATCDesign primers
1833412TTCCTCTTCTTCCGCTTCTTCCTCTTGDesign primers
1888537TT-AT-AT-TT-TT-AT-AT-AT-AT-TT-TT-ATDesign primers
2113757AATATTAAAAAAATAATAAATAGATATTTAAAADesign primers
2224814AATAAAAATCAAAATATAAATTAADesign primers
2250489CTTCTAATTA-CTTCTAATTA-TTTGTAATTADesign primers
2283337TCA-TCA-TCA-TCA-TCT-TCA-TCA-TCC-TCA-TCADesign primers
2289048TAACTGAATAACGGAATAACAGAADesign primers

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