Microsatellites /Tandem Repeats database

Genome: Haemophilus influenzae F3047

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
60321AAAATAAAAAGAAAAATCAAAACADesign primers
97499CTAT-TTTA-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTGDesign primers
97949GGCA-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATCDesign primers
143265AA-AG-AA-AA-AC-AA-AA-AG-AC-AA-AG-AADesign primers
144336AATGAAATTGAATATGAAAATGTADesign primers
154854AGAGACTTCTACTGAAGAAACAACGGTAACTTCTACTGAAAAAACAACGGTAACTTCTACTGAAAAAACAACDesign primers
168457AACTT-TTGTC-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTT-CTGTTDesign primers
196502CATT-GATT-AATT-AATT-AATT-AATT-AATT-AATT-AATTDesign primers
253858TATTCTTTTTCTTATTTTTTTTCTTATTATDesign primers
293263ACTA-CTTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTT-GCTTDesign primers
383526ACTC-TTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTG-CTTGDesign primers
423693TT-TT-CT-TT-GT-TT-CT-TT-GT-TT-CT-TTDesign primers
495751AAATAAACTAAAACAAAATTAAATTDesign primers
506333TGAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAA-CCAADesign primers
532338GCTGCTGCTACTGCTGCCGCTGCTDesign primers
552993AAATAAACTAAAACAAAATTAAATTDesign primers
564928GCTG-CCCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCADesign primers
612143CTGA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCA-ACCADesign primers
657077CACT-TATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATCDesign primers
662874CATTCCGCCCATTCCACCCATACCGCCDesign primers
680139ATTTGAGCCTAA-ATTTGAGCCTAA-ATTTGAGACAAADesign primers
701830AAAAATGACAAATGAAAAATTGAAAATGDesign primers
750210ATTTTACTTTTAATTTTGATTTTADesign primers
753931CTTC-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCTDesign primers
794349GTACA-GCAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGA-AGAGADesign primers
808787GTCTGGGTAAT-TACTGGGTAAT-TACTGGGTAAT-TACTGGGTAATDesign primers
816475TTCA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAADesign primers
826438TGCTGA-AGCTAA-AGCTAA-AGCTAA-AGCTAA-AGCTAADesign primers
826517GCTGAA-GCTAAA-GCTAAA-GCTAAADesign primers
897404ACAA-TATG-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
985987AT-CT-TT-AT-CT-TG-CT-CT-TT-AT-CT-TTDesign primers
986665TTTATT-GCCATT-GCCATT-GCCATT-GCCATT-GCCATT-GCCATT-GCCATT-GCCATTDesign primers
989375CATTTGCACTTGCATTTTTATTTGDesign primers
993921TCAT-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACA-GACADesign primers
1024313AGCACGACCAGAACGACCTGCACGACCAGTACGACCDesign primers
1029367AAAA-ATAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAATDesign primers
1044434TAAACAAA-GAAACAAA-GAAACAAADesign primers
1048595ATTATTA-ATTCATA-ATTCATA-ATTCATA-ATTCATA-ATTCATADesign primers
1053612TATAAGCTCGCT-GGTAAGCTCGCT-GGTAAGCTCGCTDesign primers
1149431TGTTTATGCTCGTGTTTATGATCATGGTCATGGTCATGTTTATGATCATGTTTGTGTTCGTGCTTATGGTCADesign primers
1157140AGGAAAGTGAAAAGAGGGAACTGAAAAGAGGGAACTGAAAAGDesign primers
1181980AATC-GAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAGDesign primers
1190285TGTTGGTGATGGTGTTGCTGTTCGDesign primers
1217574TTAGCAGAACTTGAAGCTTGTTGAGCAGAGCTTGAAGCTTGTTGTGCGGAGCTTGAAGCTTGTDesign primers
1218225TTAGCAGAACTTGAAGCTTGTTGAGCAGAGCTTGAAGCTTGTTGTGCGGAGCTTGAAGCTTGTDesign primers
1218876TTAGCAGAACTTGAAGCTTGTTGAGCAGAGCTTGAAGCTTGTTGTGCGGAGCTTGAAGCTTGTDesign primers
1219527TTAGCAGAACTTGAAGCTTGTTGAGCAGAGCTAGAAGCCTGTTGTGCGGAGCTTGAAGCTTGTTGAGCCGAGCTAGAAGCTTGTDesign primers
1219612GTGCGGAGCTAGAAGCTTGTT-GTGCGGAGCTAGAAGCTTGTT-GTGCGGAGCTAGAAGCCTGTT-GTGCGGAGCTTGAAGCTTGTTDesign primers
1219779TTAGCAGAACTTGAAGCTTGTTGAGCAGAGCTTGAAGCTTGTTGTGCGGAGCTTGAAGCTTGTDesign primers
1220304TTAGCAGAACTTGAAGCTTGTTGAGCAGAGCTAGAAGCCTGTTGTGCGGAGCTTGAAGCTTGTTGAGCCGAGCTAGAAGCTTGTDesign primers
1220460CTGGCTGCGGCGCTGGCGGATGTGGATGCGGCGCTGGCGGATGTGGATGCTGCACTGGCGGATGTGGATGCCGCACTGGCGGATDesign primers
1252001CAATTT-CAATAT-CAATAT-CAATATDesign primers
1281684CCTCATTA-TTTGATTA-TTTGATTA-TTTGATTA-TTTGATTA-TTTGATTADesign primers
1295846TGCTGA-TGCTGA-TGTTGA-AGCTGA-TGCTGCDesign primers
1304309TTTTGGTGATATGTTCGGTGATATTTTTGGCGATATDesign primers
1385111TGAAAAAGTGCGGTAGAAAAGTGCGGTAGAAAAGTGCGGDesign primers
1388961ACCTTGAACAAGGTAGTGAAAATTTTGCACTAGGTAGTGAAAATTTTGCACTAGGTAGTGAAADesign primers
1536926TTAT-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
1581185GCAAGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATG-ATGCGATGDesign primers
1584898TTAGGA-TTAGGA-TTAGAA-TTAGAADesign primers
1585145GGCT-AGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTT-TGTTDesign primers
1615975CTAT-GCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
1641670CTAT-GCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAADesign primers
1739775TTTGAGCCACTATAATTTGTTCCACTATAATTTGCTCCACTACAADesign primers
1816942TGTG-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACA-AACADesign primers
1845367TTTGAGCCACTATAATTTGTTCCACTATAATTTGCTCCACTACAADesign primers
1936000ATAA-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGC-CAGCDesign primers
1952951AACAAGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGAT-GATGCGATDesign primers

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