Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori 83

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
7618CCACCCATACCTCCCATACCGCCCATADesign primers
12626AGGGAGTTTTTGAGAGTTTTAGGGATTTTCDesign primers
91279AGATGAAGAAGAATATGAAGACGADesign primers
122303TATGGCATGTATGGAATGTATGGCATGDesign primers
123147ACACTAACACCGACGACACTCACACTGAAGACACTCACACCGATGATACTCACACCGACADesign primers
132113GCTTTAATTTCTTTGACTTTGCTTTCTTTGGTTTTAGTTTCTTTADesign primers
165125GTTTCTTTAATGAAATCTTTC-TGTTCTTTAACCAAATCTTTC-TGTTCTTTAACCAAATCTTTC-TGTTCTTTAACCAAATCTTTCDesign primers
165271GCTTGTCCTTTGTTTTTCTTG-TTCTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTTTTCTTG-TTCTGTCTTTTGTTTTTCTTGDesign primers
209724TTTTTCTTCTGT-ATTTTCTTCTGT-GATTTCTTCTGT-GATTTCTTCTGT-GATTTCTTCTGT-GATTTCTTCTGTDesign primers
212189CCTCTTTAGGCTCCTCTTTAGTTTCTTCTTTAGCCTDesign primers
254649TTTTCTTTTGCATGCTCTTTTTTTGCATGCTTTTCTTCTATATGCDesign primers
272915TGTTTGGTT-GGTTTGGTT-GGTTTGGTTDesign primers
325914CCCTAATATCCCCAATATCCCTAATATDesign primers
347813ACAATGCGGGGCAATAATGCGGGGCAATAATGCGGGGTAATAATGCGGGGTADesign primers
354042GATGGGGGCGATGGAGGCGATGGGGGCDesign primers
369795GAGTTTCTTTAACCTCTTCTTTTT-CTTCTTCTTTAACCTCTTCTTTTT-CTTCTTCTTTAACCTCTTCTTTTT-CTTCTTCTTTAACCTCTTCTTTTTDesign primers
421093CGCTACTTCTATATCACACCACTTCTATATCACACCACTTCTGTATCACACCACTTCTGTATCACACCACTTCTGTATCACACCACTTCTGTATCADesign primers
435122GCTGAAGAAAATACGGCTCAAGAGAATATGACTGAAGAAAATACCDesign primers
456728AACCTTAAAAATCCTTTAAAAATATTAAAADesign primers
469972TCCTTTTATCACATTTTATCACATTTTATCDesign primers
474819TAA-CAA-TAA-AAA-TAA-TAA-AAA-CAADesign primers
485036GAAGCGTTTGTGGAGGCGTTCGTGGAGGCGTTTGTGDesign primers
487266TTTTGATGATTTTGATCATTTTGATGADesign primers
500994TTTTTATCTTTATCTTTTTCTTTATTTTTATCTTGTDesign primers
517865AA-AA-TA-AA-AA-TC-AA-AA-AA-AA-AA-AADesign primers
541757TTCACAGAATTA-AACACAGAATTA-AACACAGAATTADesign primers
579046TCAAAATTTAA-GATAATTTTAA-GATAATTTTAA-GATAATTTTAA-GATAATTTTAA-GATAATTTTAADesign primers
618055AGCGCTAAAAAAGAA-ATTCCTAAAAAAGAA-ATTCCTAAAAAAGAA-ATTCCTAAAAAAGAA-ATTCCTAAAAAAGAA-ATTCCTAAAAAAGAA-ATTCCTAAAAAAGAA-ATTCCTAAAAAAGAA-ATTCCTAAAAAAGAADesign primers
624244CTAGAAAGCGGGTAAGAAAGCGGGCAAGAAAGCGGGDesign primers
694416TTAAAGAATAAAGAACTGAAAAATAAAGAATTGAAGAATAAAGAADesign primers
709258TTTTGAAACATTTTTGAAAGTTTTTTGAAAATTDesign primers
710804GCCAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAAT-AATAAATATCTCAATDesign primers
756842TATTACATGCCTTATTATTACATGCCCTATGGTTTCATGCCTTATDesign primers
759729CAAAGCGCTTCAAACCACTTAAAAGCGCTTDesign primers
772443AACCCCAATGAA-CCCCCCAATGAA-CCCCCCAATGAADesign primers
773129GAAAGCGCGCAAAAAATCGCGCAAAAAATCGCGCAADesign primers
775910AGCAATTCGTATTTTCTTGTG-AGATCATCGTATTTTCTTGTG-AGATCATCGTATTTTCTTGTG-AGATCATCGTATTTTCTTGTG-AGATCATCGTATTTTCTTGTG-AGATCATCGTATTTTCTTGTGDesign primers
795016TCAATCATTTTAAAT-CCTTTCATTTTAAAT-CCTTTCATTTTAAAT-CCTTTCATTTTAAAT-CCTTTCATTTTAAATDesign primers
825597CCTAAACCAAAACCCAAACCTGAACCCAAADesign primers
841133TATTGGCATGGGTGTTTTGGGCATGAGTGTTTTGGGCATGAGTGTDesign primers
904501CCTTTTAAACATTTTTAAACTTTTTTAAACDesign primers
937713GTTTTAAAAAAAAGAGGATTTAAAAAAGAAAGACTTCAAAAAAAAGAGDesign primers
937775GTTTTAAAAAAAAGAG-TTTTAAAAAGAAAGAG-TTTTAAAAAGAAAGAG-TTTTAAAAAGAAAGAGDesign primers
949586CAAAAACCCCTTGATCAAAAGCCGCTTGAACAAAAACTCTCTGATDesign primers
949651TGAACAAAAGCCACTTGATCAAAAACCGCTTGAACAAAAACCCCTTGATCAAAAGCCCCADesign primers
977252TTTTTATCTTTATCTTTTTCTTTATTTTTATCTTGTDesign primers
1039230GACATTCA-ATCATTCA-ATCATCCA-ATCATTCA-ATCATCCA-ATCATTCA-ATCATCCA-ATCATTCADesign primers
1039295GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAADesign primers
1041292GAAGAAGAATTTGAAGAGGAAATTGAAGAAGAAATTDesign primers
1051316TCTTTTTCTTCTTTTTCGTTTTTTTCTDesign primers
1091718CTTCTCAAATTATCATAATTA-ACCCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTA-ACCCTCAAATCATCATAATTADesign primers
1116555TTTTCTAAATTTTCTAAGGTTTCTAAADesign primers
1152127CCAGAAAATACCACAAAATCCCCGCAAATADesign primers
1160086CTAAAAATAAAACTTAAAATAAAADesign primers
1179891ATC-ATC-ATC-GTC-ATC-ATC-GTC-ATC-ATC-ATCDesign primers
1182419AAAGAAAATAAAAGGATAGAAATGADesign primers
1211473GTTTCTTTAATGAAATCTTTC-TGTTCTTTAACCAAATCTTTC-TGTTCTTTAACCAAATCTTTC-TGTTCTTTAACCAAATCTTTCDesign primers
1211619GCTTGTCCTTTGTTTTTCTTGTTCTGTCTTTTGTTTTTCTTGTTCTGTCTTTTGTTTTTCTTGDesign primers
1239255ATCATTTATTT-GGCATTTATTT-GGCATTTATTTDesign primers
1263116TAACCCATATAAACCATATAAGCCATADesign primers
1271405AAAGAGAGTTTAAAAAAAAGAGAGTTTAAAGAAAAGAGGGTTCAAAGADesign primers
1271454AG-TT-TA-AA-AA-AG-AA-AG-CT-TT-AA-AA-AA-GA-AA-GT-TT-TA-AA-AA-AG-AA-ADesign primers
1274026AAGCCAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGATDesign primers
1285127GCCAAAAAA-GAGAATAAA-GAGAATAAA-GAGAATAAA-GAGAATAAA-GAGAATAAADesign primers
1333664TGTATTTA-TGTATTTA-TGTATTAADesign primers
1340891AAAGAAACTCAAGAAACTAAAGAAACTDesign primers
1353533AACCCAAGAAAGAAGAGCCAAAAAAAGAAGAACCCAAAAAAGAGGDesign primers
1353581CAAAAC-CCAAAC-CCAAAC-CCAAACDesign primers
1353613AAACCTAAGCCTAAACCCAAACCCDesign primers
1353652CCCGAGCATAAGCCCGAACCTAAGCCCGAGCCTAAADesign primers
1379757AATAAAGA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAA-AGAATAAADesign primers
1383891GACATTCA-ATCATTCA-ATCATCCA-ATCATTCA-ATCATCCA-ATCATTCA-ATCATCCA-ATCATTCADesign primers
1383956GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAA-GTAATCAADesign primers
1385957GAAGAAGAATTTGAAGAGGAAATTGAAGAAGAAATTDesign primers
1386673ATTTGGATATGGTTTTGGATTTAGDesign primers
1406793CTGTTTTCA-TTGTTTTCA-TTGTTTTCA-TTGTTTTCADesign primers
1427057AAGAAAAACCCAAACCAAAACCCAAACCAAAACCCADesign primers
1493019GCGGGTCCGGGTGCGGTTGCAGGTDesign primers
1497078AAGCGTTTCAAAAGCGTCTTAACAGCGTTTTAADesign primers
1515691AATTAAAGACAATAATATTAAACAAAATAACATTATTGACAATAADesign primers
1597947TATCGTTTTATCTTTTTATCATTTDesign primers

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