Microsatellites /Tandem Repeats database

Genome: Lactococcus lactis subsp. lactis KF147

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
257728AAAAACTAAGAAAAATAAAGAAAAACTACTDesign primers
431662TTTTTATTTTAATTTTTATTTTTCDesign primers
489860TAAAATTAAATATAATTAAAGAAAADesign primers
544958AAATAATGAAATAAAGAAATAATGAAATAATGDesign primers
717953AAATTCAAAAATTTAAAAATCCAADesign primers
800722AAATGCAAATACAAGTGCAACTGCDesign primers
906898AA-AT-AA-AA-AA-AT-AG-AA-AT-AT-AA-AADesign primers
932469TTAAAAAATTAAAATAGTAAAAAADesign primers
975084TA-AA-AA-TA-AA-GA-AA-AA-AA-TA-AA-TADesign primers
1097446GGGAAAGATGGTAAAGATGGAAAAGATDesign primers
1190452GTTGAACTTGAATTTGAAGATGAADesign primers
1331512TCAATACCGACC-CTAATACCGACC-CTAATACTGACC-CTAATACTGACC-CCAATACTGACC-TTAATACCGACCDesign primers
1331585TAATACTGACCC-CAATACTGACCT-TAATACTGACCT-TAATACTGACCT-TAATACTGACCC-TAATACTGACCC-TAATACTGACCC-CAATACTGACCT-TAATACTGACCT-TAATACTGACCC-TAATACTGACCCDesign primers
1355005TGATTTGG-TTATTTGG-TTATTTGG-TTATTTGGDesign primers
1459539TTTTATTGTATTTAACTTTATTTTTDesign primers
1462644TATTAG-CATTAG-CATTAG-CATTAGDesign primers
1472560TATTTTTTAATATTAATTAATATATTTGAADesign primers
1479531TTTTTTGTTTTTTATTATTTTTTTCDesign primers
1479603TAT-TAT-TAT-TTT-TTT-GTT-ATT-TTT-TTG-TTA-TTTDesign primers
1525919CAGCAA-CCGCAA-CCGCAA-CTGCAADesign primers
1740575CTGAGCTTCCTGAACTTCCTGAGCTTGDesign primers
1814825ATATTATAAAATTATAATATAATADesign primers
1865927TTTACATTTGCATTTCCATTTACADesign primers
1867375TTTTTTTGTCAGTA-AATTTTTGTCAGTA-AATTTTTGTCAGTA-AATTTTTGTCAGTA-AATTTTTGTCAGTADesign primers
1867476TTTTTGTCAGTAAGTTTCTGTCAGTAGGTTTCTGTCAGTAAGTTTCTGTCAGTAGGTTTCTGTCAGTAGGTTTCTGTCAGTAGGTTTCTGTCAGTAAADesign primers
1921205TTTTTTTTATTTTATTATTTCTTTTDesign primers
1987542CAAATCCAAGTCCAAATTCAACTCDesign primers
2013247TTTTA-ATTTA-TTTAA-TTTTA-TTTTA-TTTTADesign primers
2123500ATTGTT-TCTGTT-TCTGTT-TCTGTT-TCTGTT-TCTGTTDesign primers
2245865TAAAAGGTTATAAAAAATTACAAAAAGTTADesign primers
2257142TATCATTTTATTATTTTATTATTTDesign primers
2312518TGTATTTGTGTTTGTATTTGAATTDesign primers
2327237TCACT-TGATT-TCATT-TGATT-TGACT-TCATTDesign primers
2347368TTCTTT-TTCTTT-CTCTTT-TTCTTCDesign primers
2431155AATTAATAACTTAATAATTTAATADesign primers
2460918TTTTTTCTTCTTGTTTTTCTTCTCTTTTTTCTAATTDesign primers
2554158AAGTATTGATATCCAGTATTGATATTAAGCATTGATACCDesign primers
2570968CTTTTTCTATTTCTTCTTCTTGTTDesign primers

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