Microsatellites /Tandem Repeats database

Genome: Staphylothermus hellenicus DSM 12710

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
208016AA-GC-AA-AA-GG-AA-AA-AC-AA-AA-AC-AADesign primers
260797ACAACTACAACCACTACTACAACTDesign primers
369209ATATATACATATATATTTATATATDesign primers
383392TGTTAGTGTCAGTATTAGTGTTATDesign primers
404650TTGTAG-TTGTAG-TAGTTG-TTGTGG-TTGDesign primers
469384AAAATAAAAACAAATATAATAATATDesign primers
469560GAGAAGGAGAAAAAGAAGGAGGAGDesign primers
484492TTGGTATGGGTATTGGTATGGGTADesign primers
542024GGGCAAGA-GGGCAAGA-GGGCAAAADesign primers
627094CAACCACAACTACAACAACAACCADesign primers
627132ACAACTACAACCACGACTACGACTDesign primers
627157CTACCACGACCACTACTACTACAADesign primers
627213ACAACTACAACCACTACACCAACTACADesign primers
627301TAATAATAACAATAATCATAATCATCATAADesign primers
627598TTGTTGTAGTTGTAGTAGTTGTTGGAGDesign primers
627723GTCGTTGTTGTCGTGGTTGTCGTTGTGDesign primers
650496GCTTTTGTTGCATTTGTTGCTTTTGCTDesign primers
651522AATCCTAGAAGATCCTAGGAAATTCTATAADesign primers
757176TTGAAGTATGGAAGTATTCAAGTADesign primers
770325TGT-TGT-TGT-AGT-TGT-CGT-TGT-AGTDesign primers
786693ACACTAATACTACCACTAATACTADesign primers
1080075TATTATTATGATTATGATTATTGTTATTATDesign primers
1080184GTTGTCGTTGTAGTAGTCGTTGTGDesign primers
1080271GTTGTTGTGGTAGTAGTTTTAGTCGTAGTAGGTGTAGTGGTGGTADesign primers
1080429TGT-TGT-TGT-GGT-TGT-AGT-TGT-AGTDesign primers
1080639GGT-TGT-AGT-GGT-TGT-GGT-TGT-CGT-GGC-CGT-TGT-TGT-TGT-AGT-TGTDesign primers
1080706GTTGTCGTTGTAGTAGTCGTTGTGDesign primers
1080766GTAGTGGTTGTGGTAGTGGTAGTGDesign primers
1082393TGT-TGT-TGT-GGT-TGT-AGT-TGT-AGTDesign primers
1082448GTAGTAGTGGTCGTGGTAGTAGTCGTAGTCGTGGTTDesign primers
1082501TGT-TGT-GGT-TGT-TGT-TGT-AGT-TGT-TGT-AGTDesign primers
1305175CCTATGTAGGCCTATTGAGGCTTACGTAGGDesign primers
1338816TTC-TTC-TTC-CTC-TTC-TTC-TTC-CTCDesign primers
1339262TTC-TTC-TTC-CTC-TTC-TTC-TTC-CTCDesign primers
1467588TAATACTATAATATTATAATACTADesign primers
1490318TTA-CCA-TTC-TTC-TTC-TTC-TTC-CCA-CCA-CTC-CTC-TTC-TTC-TTC-TTC-CCA-TTC-TTC-TTC-CTC-TTCDesign primers

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