Microsatellites /Tandem Repeats database

Genome: Xanthomonas citri subsp. citri Aw12879

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11193CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
123624TGACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCADesign primers
171944CCGCAT-CCGCAT-CCGCAT-CCGCATDesign primers
246727AATCCCC-AATCCCC-AATCCCC-AATCCCCDesign primers
308745GATGAC-CATGAC-CATGAC-CATGAC-CATGAC-CATGAC-CATGAC-CATGACDesign primers
316277TGCACCATCGCCACAA-CGCACCATCGCCACAA-CGCACCATCGCCACAA-CGCACCATCGCCACAA-CGCACCATCGCCACAA-CGCACCATCGCCACAA-CGCACCATCGCCACAADesign primers
412841GCACCG-GCACCG-GCACCG-GCACCG-GCACCGDesign primers
556957TGCATC-TACATC-TACATC-TACATC-TACATC-TACATC-TACATC-TACATCDesign primers
566258CGCCAA-CGCCAA-CGCCAA-CGCCAADesign primers
567060TGGCACGC-AGGCACGC-AGGCACGC-AGGCACGC-AGGCACGC-AGGCACGCDesign primers
703306TTGCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCTDesign primers
754607CACGC-CACGC-CACGC-CACGC-CACGCDesign primers
791801ACACCG-ACACCG-ACACCG-ACACCGDesign primers
859006ACAGCGACG-ACAGCGACG-ACAGCGACGDesign primers
1028153GAATCGG-GAATCGG-GAATCGG-GAATCGGDesign primers
1054507GCGAGCG-GCGAGCG-GCGAGCG-GCGAGCGDesign primers
1078477CGACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACACDesign primers
1078626CGCAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAG-CACAGDesign primers
1103151ATTCCCA-ATTCCCA-ATTCCCA-ATTCCCADesign primers
1253797CGGAACAGCTTGGTGACC-CGGAACAGCTTGGGGACC-CGGAACAGCTTGGGGACC-CGGAACAGCTTGGGGACCDesign primers
1277203GTGCCGGGAAAA-TTGCCGGGAAAA-TTGCCGGGAAAADesign primers
1471759GGTGGAGGTGGCGGA-GGTGGAGGTGGCGGA-GGTGGAGGTGGTGGADesign primers
2048587GGGAATC-GGGAAGC-GGGAAGC-GGGAAGC-GGGAATC-GGGAATC-GGGAAGC-GGGAAGC-GGGAAGC-GGGAAGC-GGGAAGC-GGGAAGC-GGGAAGC-GGGAAGCDesign primers
2093300CGCAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGC-GACAGCDesign primers
2113449TGTGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGADesign primers
2113559GATAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
2121734GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
2215827GCAGCGGCTCGG-TCAGCGGCTCGG-TCAGCGGCTCGGDesign primers
2513072TGCCGG-TGCCGG-TGCCGG-TGCCGG-TGCCGGDesign primers
2751167GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
2936107ACGCTCTAGGCCGATGCGACGGTCTAGGCCGATGCGACGGTCTAGGCCGATGCGDesign primers
3005469GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGT-GCTGGTDesign primers
3080966TGGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
3127281AGTCGGGAATCGGGAATCGGGAATCGGGAGTGGGGAATCGGGDesign primers
3175383AGGCGATGG-AGGCGATGG-AGGCGATGGDesign primers
3196706AATGCC-GATGCC-GATGCC-GATGCC-GATGCC-GATGCCDesign primers
3213765CATTCCC-GATTCCC-AATTCCC-GATTCCC-GATTCCC-GATTCCCDesign primers
3248176GTTGCAGCG-GTTGCAGCG-GTTGCAGCG-GTTGCAGCG-GTTGCAGCGDesign primers
3259733CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
3303777AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGCDesign primers
3307910CGTCAGCA-CGTCAGCA-CGTCAGCADesign primers
3346738CGCGCC-CGCGCC-CGCGCC-CGCGCCDesign primers
3362636GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
3406513TGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
3420825TCTCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGADesign primers
3438074GCGGCGCCGC-GTGGCGCCGC-GTGGCGCCGC-GTGGCGCCGCDesign primers
3456368CGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
3456425GGATTCG-GGATTCG-GGATTCG-GGATTCGDesign primers
3488894TCTTGGCGTCGG-CCTTGGCGTCGG-CCTTGGCGTCGGDesign primers
3495225AGCAGCGTC-AGCAGCGTC-AGCAGCGTCDesign primers
3600791TATTGC-CATTGC-CATTGC-CATTGC-CATTGC-CATTGCDesign primers
3667473TCCTGCCACT-GCCTGCCACT-GCCTGCCACT-GCCTGCCACTDesign primers
3726229CGTGCTGT-CGTGCTGT-CGTGCTGTDesign primers
3732329GCGACGTAA-GCGACGTAA-GCGACGTAADesign primers
3804404CTTCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGGDesign primers
3950138ACGGGCA-ACGGGCA-ACGGGCA-ACGGGCADesign primers
3970910GCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
4158190GCTGCA-GATGCA-GATGCA-GATGCA-GATGCA-GATGCADesign primers
4217114TCGCCG-TCGCCG-TCGCCG-TCGCCGDesign primers
4297181CGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-CGG-CGG-CGG-CGG-CGG-CGG-CGG-CGGDesign primers
4297625CGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGG-TGG-CGGDesign primers
4300380GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
4352310GCTGTTG-GCTGTTG-GCTGTTG-GCTGTTGDesign primers
4352339CCGTTGG-CCGTTGG-CTGTTGG-CTGTTGG-CTGTTGG-CTGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CTGTTGG-CTGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CTGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CCGTTGG-CTGTTGG-CTGTTGG-CTGTTGG-CCGTTGG-CTGTTGG-CTGTTGG-CCGTTGG-CCGTTGGDesign primers
4391350CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4391752GCGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTG-CTGTTGDesign primers
4404600GCGGTG-GCAGTG-GCAGTG-GCAGTG-GCAGTG-GCAGTGDesign primers
4473266GGCATAGTCATC-GGCATAGTCATC-GGCATAGGCATCDesign primers
4507374CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
4551958ATCGGC-ATCGGC-ATCGGC-ATCGGC-ATCGGCDesign primers
4626032GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
4689520GCATC-GCATC-GCATC-GCATC-GCATCDesign primers
4707503GCCGGGA-ATCGGGA-ATCGGGA-ATCGGGA-ATCGGGA-ATCGGGA-ATCGGGA-ATCGGGA-ATCGGGADesign primers
4792031ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
4803158CCCATTC-CCTATTC-CCTATTC-CCTATTC-CCTATTC-CCTATTCDesign primers
4953112CGGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGATDesign primers
4953200GATTGGC-GGTTGGC-GGTTGGC-GGTTGGC-GGTTGGC-GGTTGGCDesign primers
5010523GTCGTGCTGCGCTTG-GTCGTGCTGCGCTTG-GTCGTGCTGCTCTTGDesign primers
5023466ACCGGC-ACCGGC-ACCGGC-ACCGGCDesign primers
5052808GGC-GGC-GGC-GGC-GGC-GGC-GGC-GGCDesign primers
5080014CGA-CGA-CGG-CGA-CGG-CGA-CGG-CGA-CGG-CGA-CGG-CGADesign primers
5116949GCTGATG-GCTGATG-GCTGATG-GCTGATGDesign primers
5128176GAAGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTC-GGTGTCDesign primers
5138109CCAGAA-CCAGAA-CCAGAA-CCAGAADesign primers
5226262GGGATTG-GGGATTG-GGGATTG-GGGATTGDesign primers
5231532TTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCTDesign primers

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