Microsatellites /Tandem Repeats database

Genome: Acinetobacter baumannii BJAB0868

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
5934TAATCCAAA-GAATCCAAA-GAATCCAAA-GAATCCAAADesign primers
5971AAGAATCCA-AAGAATCCA-AAGAATCCA-AAGAATCCADesign primers
29059GGTCAC-CATCAC-CATCAC-CATCAC-CATCAC-CATCACDesign primers
108668TTTTTTTTATTTTTATTTATTTTTADesign primers
193082CAAGGT-CAAGGT-CAAAGT-CAATGTDesign primers
205891GCTGCTGCGGCTGCTGATCCTGCTDesign primers
572607AAAAAATTAAAAAATCATAAAATTDesign primers
702921AGCAGAAGCAGCAACGTCAGAAGCAGCAGCAGCAACGTCAGAAGCAGCAGCAGCAGTTTCAGADesign primers
703003ACAGCAGCTTCAGAAGCAGCAGCAGTAGCTTCAGAAGCAGCAGCTACAGCTTCAGATGCAGCADesign primers
703116AGC-AGC-AAC-AGC-AGC-AGC-AAC-AGCDesign primers
744904TACTGCACC-GACTGCACC-GACTGCACC-GACTGCACC-GACTGCACCDesign primers
754878TTGTGGATAACTTTGTTTATAACTGTATGGATAACTDesign primers
764474TATAAGC-TCTGTTC-TCTGTTC-TCTGTTC-TCTGTTC-TCTGTTC-TCTGTTC-TCTGTTC-TCTGTTCDesign primers
858798TTGCAG-GTGCAG-GTGCAG-GTGCAG-GTGCAGDesign primers
962414TTTCT-ATATG-ATTTG-ATTTG-ATTTG-ATTTG-ATTTG-ATTTG-ATTTG-ATTTG-ATTTG-ATTTGDesign primers
1077372TTTTTTTCTTTATTTTTTTATTATTDesign primers
1085291TTTAAATATAAATTTATATTTTAADesign primers
1159217AATTTTCATGAAATATTCATCAAATGATCATGADesign primers
1191587ATGAATTTGAATATCAATATGAAADesign primers
1195709AAAAAATAAAAATAAAAAATAAAAGDesign primers
1534569TGTTTTTAATTGATTTTAAATATTTTAAATDesign primers
1605873ACGAACACGACCACGAAGACGATCDesign primers
1633609GAT-GAT-GAT-GAC-GAA-GAT-GAT-GATDesign primers
1689193ATTTTAATTTTCATTGTACTTTTADesign primers
1782615AAAATTAAAATCAAAACTAAAAATDesign primers
1978883TTTAATTTTAAATTAAATTTCAATDesign primers
2036399ATAAACCTATGATAGAACTATGATAGAACTATGDesign primers
2135781TATATGTTTAGATGTTTATATATTDesign primers
2398265TGATCA-GGTTCA-GGTTCA-GGTTCA-GGTTCA-GGTTCADesign primers
2548071TTGTAAAAAAAGTGAAAAAAAATTAAAAAAAAADesign primers
2551856AATATTCATATTAATCTTAATTTTDesign primers
2910599ATTTTTTAATCTTTTTTGATATTTTTCGATDesign primers
3044382CCGCCCATACCACCCATACCGCCCATADesign primers
3250296AA-AA-TA-CA-AT-AA-AA-AA-AT-AT-AA-AA-ADesign primers
3538256TTACTATTTTAATATTTTAATATTDesign primers
3602191ATAAAAAAAGCTAAAAAAATATAAATACAGDesign primers
3602484AATAAAATTAAAAATAGAAATCAAAATAAADesign primers
3803303ATTCTTCTTCATGTTCTTCTTCATAATCATCTTCATDesign primers

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