Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Pullorum str. S06004

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
93CACCACCACCATTACCACCATCACDesign primers
68303TTT-TAA-TTA-ATT-TAA-TTA-TTT-TTA-TTADesign primers
246029CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
539231ACACCAA-CTACCAA-CTACCAA-CTACCAA-CTACCAA-CTACCAADesign primers
577180AGAAATAGCTTATTTTTATAAGTAATTGATTATTTTTATAAGTAATTGATTATTTTGATADesign primers
999042ACGAAAAATAACCAGAAATAACAAAAAACADesign primers
1684935CGCTGCGGCTGCCGATGCGGCTGCDesign primers
1696119TCCTGCTCCGTCATGCTCTGTACCGCTCCGDesign primers
1941610GCTCCGGCACCGGCTCCGGCTCCGDesign primers
2017289CCGGCTGCT-GCGGCTGCT-GCGGCTGCTDesign primers
2085341TCCGCA-ACCGCA-GCCGCA-GCCGCADesign primers
2139751TTCGCGCCAGTTCGCGGCATCGCGCGCCAGDesign primers
2230746ATATAAAAAACATATAATTAACATTTAAGAAACDesign primers
2652798GAGCCAACCTGTACGGTGCCGACCTGTACGGTGCCAACCTGCGCGGTGCCAACCTGTACGGTGCCGACCTGTACGGTGCCAACCTGCGCGDesign primers
2652889TGCCGACCTGCGCGATGCCGACCTGTGCGGTGCCGACCTGTACGGTGCCAACCTGCGCGGTGCCGACCTGCGCGATGCCGACCTGTGCGGTGCCGACCTGCGCGATGCCGACCTGCCTGADesign primers
2949724TATGGGTTTATGTGAGTTTATAAGGGTTTTDesign primers
2953565CC-GC-CT-CG-CC-CC-CC-CC-CC-CC-CC-GC-CDesign primers
3034698GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3083814ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATG-ACCATCDesign primers
3124990CCGGCGCTGGCGCCGGTGCTGGCGDesign primers
3303809TATTTTC-TATTTTC-TATTTAC-TATTTAC-TATTTAC-TATTTAC-TATTTACDesign primers
3363162TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
3829251GCG-GCG-GAG-GCG-GCG-GAG-GCG-GCGDesign primers
3838183CGCCGCTGACCCCGCTGACCCCGCTGADesign primers
3868945GCGCCCGGCGCGCCAGGCGCGCACGGCDesign primers
3963499TTTCTTGTTCTTTTTGTTGTTCTTDesign primers
4434303GGTGGCATGGGTGGTATGGGTGGTATGGGCGGCATGDesign primers

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