Microsatellites /Tandem Repeats database

Genome: Pandoraea pnomenusa 3kgm

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
33390GGAATGCGAC-GGAATGCGAC-GTAATGCGACDesign primers
39974ATCGCTGCAT-ATCGCTGCAT-ATCGCGGCAT-ATCGCGGCAT-ATCGCGGCATDesign primers
119286GCAGGGGCG-GCAGGGGCG-GCAGGGGCGDesign primers
252093TCGGGCTCGGTCCGGCTCGGTCGGGCTCGGTCGGGCTCAGDesign primers
267192GAGGTCGAG-GAGGTCGAG-GAGGTCGAGDesign primers
283915GCTTTTGCGGGCGCTCTTGCGGGCGCTTTTGCGGGCDesign primers
296844GGGGGCAC-GGGGGCAC-GGGGGCACDesign primers
358576GGCCGGTGT-GGCCGGTGT-GGCCGGTGTDesign primers
553354GCCCGAAGAAGCGGCCGAAGAAGCGCCCGATGAAGCDesign primers
588668ACGTCTGAC-ACGTCTGAT-ACGTCTGAT-ACGTCTGAT-ACGTCTGAT-ACGTCTGATDesign primers
606662GTGCTTCAGGCGGGCTTCAGGCGGGCTTCAGGCDesign primers
649002GACGAATCC-GACGAATCC-GACGAATCCDesign primers
659532CGAAACGGTGCGAAACGGCGCGAAACGTTGDesign primers
685940GTACGAGCG-GTACGAGCG-GTACGAGCGDesign primers
706067CCGTTAACGTCCGTGAACGTCCGTGAACGTDesign primers
726372CCGCCCGAT-CCGCCCGAT-CCGCCCGAT-CCGCCCGAT-CCGCCCGATDesign primers
727317TCGTTG-TCGTTG-TCGTTG-TCGTTGDesign primers
733255TGCCACGACCCT-CGCCACGACCCT-CGCCACGACCCT-CGCCACGACCCTDesign primers
790110CGGGAAAGG-CGGGAAAGG-CGGGAAAGG-CGGGAAAGG-CGGGAAAGGDesign primers
790156GGGAAGGAC-GGGAAGGAC-GGGAAGGACDesign primers
847597CCCAACCTCAACCCGAACCTCAACCCCAACCTCAGCDesign primers
891326GGAGCGAGAAGGAAGCGAGAAGGAAGCGGGAAGGAAGCGAGAAGGAAGCGAGAAGGAAGCGGGAAGDesign primers
891393AAGCGGGAAGG-AAGCGGGAAGG-AAGCGGGAAGGDesign primers
899150CACGCCCATCACCCGCCCATCACCCGCCCATCADesign primers
969951AAGGACGCAAAGGGCGCAAAGGACGCAAAGGACGCAAAGGACGCAAAGGGCGCADesign primers
1068241GTTCGATTT-GTTCGATTT-GTTCGATTTDesign primers
1181896TCGTCGCCAGTCGTTGCCAGTCGTCGCCAGDesign primers
1207932GCTCACCA-GCTCACCA-GTTCACCA-GCTCACCA-GCTCACCA-GCTCACCADesign primers
1209515GGAGAGTCG-GGGGAGTCG-GGGGAGTCG-GGGGAGTCG-GGGGAGTCG-GGGGAGTCGDesign primers
1249299CCGTTTGCA-CCGTTTGCA-CCGTTTGCA-CCGTTTGCADesign primers
1298501CGACGCCTCT-CCACGCCTCT-CCACGCCTCT-CCACGCCTCTDesign primers
1298542CACGCTTATC-CACGCTTATC-CACGCTTATCDesign primers
1336065GCGACTTC-GCGACTTC-GCGACTTCDesign primers
1340424TGCGCATCCCTGGGCATCCCCGCGCATCCCDesign primers
1348343CACGACGGGA-CACGACAGGA-CACGACAGGA-CACGACAGGADesign primers
1394958AAAACGACGA-GAAACGAAGA-GAAACGACGA-GAAACGACGA-GAAACGACGA-GAAACGACGADesign primers
1401996TGATGTCCGCG-CGATGTCCGCG-CGATGTCCGCG-TGATGTCCGCG-TGATGTCCGCGDesign primers
1409136GGCGTCAATCCCGGCATCAATCCCGGCATCAATCCCGGCGTCAATCGCDesign primers
1428991GGGCGTGGT-GGGCGTGGT-GGGCGTGGTDesign primers
1688870AACTGCCGG-AACTGCCGG-AACTGCCGGDesign primers
1723361CGTGTGG-CGTGTGG-CGTGTGG-CGTGTGGDesign primers
1744522GAGCGCCT-GAGCGCCT-GAGCGCCT-GAGCGCCTDesign primers
1766529GCGGGCGAATCG-GCGGGCGAATCG-GTGGGCGAATCGDesign primers
1820919GGT-GGC-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGTDesign primers
1820968GTG-GTG-GCG-GTG-GTG-GTG-GTG-GTG-GTG-GTG-GTG-GTG-GTG-GTG-GTG-GTGDesign primers
1877699GCAGAAGCCAG-GCAGAAGCCAG-GCAGAAGCGAG-GCAGGAGCCAGDesign primers
1936286GACGCCGGTTA-GAGGCCGGTTA-GAGGCCGGTTA-GAGGCCGGTTADesign primers
1945858GCCTGAGC-GCCTGAGC-GCCTGAGCDesign primers
1964391TCGCGACA-TCGCGACA-TCGCGACA-TCGCGACADesign primers
1964427GACATCGC-GACATCGC-GACATCGCDesign primers
2037487GCACGATGG-GCACGATGG-GCACGATGG-GCACGATGGDesign primers
2130345AGGCCGGGATAAGGCCGCGATAAGGCCTGGATADesign primers
2156951ATTGCCGCCGATCGCCGCCGATCGCCGCCGDesign primers
2217989AATACGGCA-AATACGGCA-AATACGGCA-AATACGGCADesign primers
2218039GCGAGACG-GCGAGACG-GCGAGACGDesign primers
2233306ATCTCCTCC-ATCTCCTCC-ATCTCCTCC-ATCTCCTCCDesign primers
2245441GCGTCCGAT-ACGTCCGAT-ACGTCCGAT-ACGTCCGAT-ACGTCCGAT-ACGTCCGATDesign primers
2257946CGCGATCAT-CGCGATCAT-CGCGATCATDesign primers
2260724TAGCGGGTGGC-AAGCGGGTGGC-AAGCGGGTGGCDesign primers
2612891TCCTATCCG-TCCTATCCG-TCCTATCCG-TCCTATCCGDesign primers
2715003GCGGCGAAGGGTGGCGAAGGGTGGCGAAGGDesign primers
2737121CGCGGCAACTGCGAGCGCGGCAACGGCGAGCGCGGCAACGGCGAGDesign primers
2743949CGATGGCTCGGCGATGGCCCGGCGATGGCTCGADesign primers
2757427CTCTTCCCG-CTCTTCCCG-CTCTTCCCGDesign primers
2792301TCACGGAT-TCACGGAT-TCACGGAT-TCACGGATDesign primers
2825743GCCCTAG-CCCCTAG-CCCCTAG-CCCCTAG-CCCCTAG-CCCCTAGDesign primers
2825800GCCATTGG-GCCATTGG-GCCATTGGDesign primers
2933422TTCCGCTTG-TTCCGCTTG-TTCCGCTTG-TTCCGCTTGDesign primers
2966830CGACGAG-CGACGAG-CGACGAG-CGACGAG-CGACGAGDesign primers
2983016ACTCAGGCA-ACTCAGGCA-ACTCAGGCADesign primers
2994016GCCGAACGT-GCCGAACGT-GCCGAACGTDesign primers
3019553ACGGCAAACGACA-GCGGCAAACGACA-GCGGCAAACGACADesign primers
3105631CGGCCTTCA-CGGCCTTCA-CGGCCTTCADesign primers
3112945GGCGCTGCC-GGCGCTGCC-GGCGCTGCCDesign primers
3247596CTCCGTT-CTCCGTT-CTCCGTT-CTCCGTTDesign primers
3315002CGGGTGACA-CGGGTGACA-CGGGTGACA-CGGGTGACA-CGGGTGACADesign primers
3350102GCAGCG-GCAGCG-GCAGCG-GCAGCG-GCAGCGDesign primers
3356756AACAACGTAATAACAACGCAATAACAACGCAATAACAACGTAACDesign primers
3401181TCCCCCGCT-TCCCCCGCT-TCCCCCGCT-TCCCCCGCTDesign primers
3464425CTGCTTCTTG-CTGCTTCTTG-TTGCTTCTTGDesign primers
3482890TTCGTCAT-TTCGTCAT-TTCGTCAT-TTCGTCATDesign primers
3497765CGGCACAGCGGCAGCACAGCGGCGGCACAGCGGDesign primers
3545025CTTCCGGCA-CTTCCGGCA-CTTCCGGCA-CTTCCGGCADesign primers
3608506CGGCGGAAG-CGGCGGAAG-CGGCGGAAGDesign primers
3662320GCGCGCCAATGCGCGTCAATGCGCGTCAATDesign primers
3766595GGCACCCTC-GGCACCCTC-GGCACCCTC-GGCACCCTCDesign primers
3768617TGGTTGTCT-TGGTTGTCT-TGGTTGTCT-TGGTTGTCTDesign primers
3771030CGCTATCC-CGCTATCC-CGCTATCC-CGCTATCCDesign primers
3800134CCCCCCTG-CCCCCCTG-CCCCCCTGDesign primers
3845891CGATTTCGA-CGATTTCGA-CGATTTCGADesign primers
3845973GCCTTGTCC-GTCTTGTCC-GTCTTGTCC-GTCTTGTCC-GTCTTGTCC-GTCTTGTCC-GTCTTGTCC-GTCTTGTCC-GTCTTGTCC-GTCTTGTCCDesign primers
3866108GCGACGCCTT-TCGACGCCTT-TCGACGCCTTDesign primers
3910169CGAACGGTG-CGAACGGTG-CGAACGGTGDesign primers
4002883TGGCGCT-TGGCGCT-TGGCGCT-TGGCGCTDesign primers
4190804ACTTTCCCGCC-TCTTTCCCGCC-TCTCTCCCGCC-TCTTTCCCGCC-TCTCTCCCGCC-TCTTTCCCGCCDesign primers
4201128TGGTGGCCT-TGGTGGCCT-TGGTGGCCT-TGGTGGCCTDesign primers
4248125TCACGGCA-TCACGGCA-TGACGGCA-TCACGGCA-TCACGGCA-TCACGGCADesign primers
4296790CCCTTCGTTGCGCTTCGTTGCGCTTCGTTGDesign primers
4486064CCGCTGCTCG-TCGCTGCTCG-TCGCTGCTCGDesign primers
4519356CGGCTGAGGCTCGACTGAGGCTCGACTGAGGCTDesign primers
4586207GCCGGATAC-GCCGGATAC-GCCGGATACDesign primers
4597774TCGCCATATC-GCGCCATATC-GCGCCATATCDesign primers
4614962GCCACACCA-GCCACACCA-GCCACACCADesign primers
4636528CCCATGAGG-CCCATGAGG-CCCATGAGGDesign primers
4666296CGTCGGGCG-CTTCGGGCG-CTTCGGGCG-CTTCGGGCG-CTTCGGGCG-CTTCGGGCGDesign primers
4720111TCGTTGCTGTTCG-TAGTTGCTGTTCG-TAGTTGCTGTTCG-TAGTTGCTGTTCG-TAGTTGCTGTTCGDesign primers
4740896CCCCGTCTCTTCCCGTCTCTCCCCGTCTTTDesign primers
4833058CACCGCCC-CACCGCCC-CACCGCCCDesign primers
4849665AAGGGA-AAGGGA-AAGGGA-AAGGGADesign primers
4931019CACACCCGA-CACACCCGA-CACACCCGADesign primers
4939089CGGTGCAAA-CGGTGCAAA-CGGTGCAAA-CGGTGCAAADesign primers
5009439CCATAACG-CCATAACG-CCATAACGDesign primers
5077912CCGGCGATTT-ACGGCGATTT-ACGGCGATTTDesign primers
5089446GTGGCC-GTGGTC-GTGGCT-GTGGTC-GTGGTC-GTGGTC-GTGGTC-GTGGTC-GTGGTC-GTGGTCDesign primers
5133642AAGCGGGGGTGAG-AAGCCGGGGTGAG-AAGCCGGGGTGAG-AAGCCGGGGTGAGDesign primers
5156201TATCGCTGCT-TATCGCTGCT-TATAGCTGCTDesign primers
5221844GGCGCTGCG-GGCGCTGCG-GGCGCTGCGDesign primers
5293793GCCTCACACG-CCCTCACACG-TCCTCACACG-TCCTCACACG-TCCTCACACG-TCCTCACACGDesign primers
5298885GCAGGACGAAGCAAGACGAAGCAGGACGAGDesign primers

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