Microsatellites /Tandem Repeats database

Genome: Alteromonas macleodii str. Aegean Sea MED64

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
517540TCCTTTTAAGCGTCTTTTTAGGCGTCTTTTTAAGCGDesign primers
601536AAAATGACCTAA-TTAATGACCTAA-TTAATGACCTAA-TTAATGACCTAADesign primers
737139TCG-TCT-TCT-TCT-TCG-TCT-TCA-TCTDesign primers
759259GGTGGCGACACTGGTGGTGATACTGGTGGCGATACTGGTGGCGATACADesign primers
882487ATTGCCATTCCCGTTGCCATTGGCDesign primers
1002060AGCGCGCGTAGCAGCGTGCTTAGCAGCGTGCTTAGCDesign primers
1177611TTTGCACTA-TCCGCACTA-TCCGCACTA-TCCGCACTA-TCCGCACTA-TTCGCACTADesign primers
1300189GAGAGATTGAGAGTTTGAGAGATTDesign primers
1333174CTTGTTTGTGAAAAACGCTAAAGGCTTATGTGTGAAACACGCTAAAGGCTTATGTGTGAAACACGCAAAAGGDesign primers
1337729GTGCAACAGAGCAACATTGCAACADesign primers
1563095TAAATAACTTGGTTTAAATAGTTTGGTTTAAATAGCTTGTTTDesign primers
1563518GGCGATATCTTTGGCGATGTTTTTGGTGATATCTTTDesign primers
1626836AGTCAGTCTTTTCAAATCAGTTTTTTCAAATCAGTTTTTTCADesign primers
1647827TTGCTTCTCTCGTTAATGCATCTCTCGTAAATGCATCTCTCGTAADesign primers
1685838AAACCTTTAACGATAGAGAAAACCTTTAACGTGAGAAAAAACCGTTAACGTTAGAGTDesign primers
1718063TTGCTGAT-TGGCTGAT-TGGCTGAT-TGGCTGAT-TGGCTGATDesign primers
1934598CGTTATTGAATACGTAAATGAATACGTAAATGAATADesign primers
2208660CAATACGAATACCAAAACCAAAACDesign primers
2320925ATACGGTAAAAGACACGGTAACAGATACGGTTAAAGDesign primers
2493175TTAGTTAAGGTTAGTAACTAGATAAGGCTAGTAACTAGATAAGGTTGGTAADesign primers
2518259GGCGGAATGTTTCGGAATGTGGCAGAATATDesign primers
2562298TCGCTT-TCGCTT-TCGTTT-TCGCTTDesign primers
2616111TCGCCTTCTGGGCCTTGTTCGCCCACAGGGCCTTGTTCGCCTACTGGGCCTTGCTCACCTGCTGGGCCTTGADesign primers
2622726GTTGGGTCGGTTGGGTAGGTTGGGTCTDesign primers
2623282CTGTGTCGCCTCCTGTATCGCCACCTGTGTCACCACDesign primers
2623319GGTATCACCACCTGTGTCACCACCGGTATCACCACCGGTATCACCACCDesign primers
2684738GAAGTAG-CAAGTAG-CAAGTAG-CAAGTAGDesign primers
2760033TTGTCTTGGTCTTTGTTTTTTTCTDesign primers
2787850TCAGGGCTGTTACTTAGC-TCAGGGCTGTTACTTAGC-TCAGGGCTGTTAATCGGCDesign primers
3100647GCTGCAA-GGGGCAA-GGGGCAA-GGGGCAA-GGGGCAA-GGGGCAADesign primers
3112394ATAGAGCCAAGCAAGATACACCAAAGCAAGATAGAGCACAGCAATDesign primers
3459312ATCGCTTGGGTTATCGCCTAGGTTACCGCTTGGGTAATCGCTTGGGTTDesign primers
3461585GGGCCATTTTTTTTGGCCCGATTTTTTTTGGGGCCGTTTTTTTTGDesign primers
3827295AAACAAAACTAAACCCAACAAAACCDesign primers
4024827TTCATTTAATTATTATGGTCGTTTAATTATTATGGTCACTTAATTATCATGDesign primers
4061438AAATGA-ACATGA-ACATGA-ACATGA-ACATGADesign primers
4104625GTGTCGCTCGCGGCGTGATTTCCGGTATCGCTCGCGGCACGATTTCCGATATCGCTCGCGGCACGATTTCCGDesign primers
4192137CATGCCGCCCATTCCGCCCATGCCGCCDesign primers
4200814CCCCTAT-TCGCTAT-TCGCTAT-TCGCTAT-TCGCTAT-TCGCTAT-TCGCTAT-TCGCTATDesign primers
4310286CTGATGAGG-CTGATGAGG-CTGATAAGGDesign primers

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