Microsatellites /Tandem Repeats database

Genome: Sulfurimonas autotrophica DSM 16294

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
19776TC-AA-AA-AA-TA-AA-AA-AA-TA-AA-AA-AADesign primers
20796TCAGGCGGTTCT-TCAGGCGGTTCT-TCCGGTGGTTCTDesign primers
23534GGTGGTTTTGGCGGTTTTGGCGGTTTTDesign primers
53727GCTTGAAGCAGAAATTGAAGCAGAAATTGAAGCAGAGATTGAAGCAGAGATTGAATCAGADesign primers
66784TAACAAAACTACAAAAAAACTATTACAAAAATADesign primers
89527TAGATTATTTAGGGATTATTTATGGATTATTTADesign primers
101703TAAAAAGCT-TAAAAAGCT-TAAAAAACTDesign primers
161999AAAAGTTGAAAAAGTTGTAAAAGCTGADesign primers
197289ATTAATATAAATATTAATATAAATDesign primers
239276AAAAATT-CAAAATT-CAAAATT-AGAAATTDesign primers
359965TATATAAATCTATAAATATATCAADesign primers
378253CTTCATCCTCATCTTCTTCTTCATDesign primers
425027TTTTTTTTCATGACAACATCTTTTTTTATAACAACATCTTTTTTAATGACAACADesign primers
427055TGCTATTAT-TGGTATTAT-TGGTATTAT-TGGTATTATDesign primers
433282TATATTTATATCTACATTTTTATTDesign primers
581084AATATGATGAAAAATATGAAGACAAATATCAGGAAADesign primers
590787CTTTTTGT-TTTTTTGT-TTTTTTGTDesign primers
622554GAAAAACTGACAAAAACAGAGAAAAATTCADesign primers
644546TTTCTTCATTTTCATCTTCATTTTTTTCTTCTTTTGDesign primers
918011TT-TG-TT-TT-TC-TT-TT-TG-TA-TA-TG-TTDesign primers
959596TTTTTTTTGTTTTTTGTTTTTGTTTDesign primers
1135023TTTTTTATTTGTTTTATTTTCTTTTDesign primers
1182532TAAAATATAATAAGAGAAAATAACADesign primers
1204712TTTTTATATA-TTTTTATATA-TATTTGTATADesign primers
1213863AAAAAAGAAAAAGAAGAAAAAAAATDesign primers
1301133CTTTTGCTTTTACTTCTGCTTTTADesign primers
1356986TT-TA-AT-TT-TT-AA-AT-TT-TT-TA-TT-TTDesign primers
1403258AAAAAATAAAAAAAAGAATAAAAADesign primers
1512575AGCTTCAGCCTCAGCTTTAGCTTCDesign primers
1553254TAAAAAGAAAAATAAATATGAAAADesign primers
1623897TAAAGAAGATAAAAAAGATAAAAAAGADesign primers
1693917TGAAGA-TGAAGA-AAATGA-AGATGA-AGATGA-AGAAGA-AGATGA-AAADesign primers
1694510GCAGATGAAGATGAAGATGCAAATDesign primers
1697421CTGAGGCTCCAAAAGCAG-AAGAAGCTCCAAAAGCAG-AAGAAGCTCCAAAAGCAG-AAGAAGCTCCAAAAGCAGDesign primers
1729565AAAAAAAATAGAAAAAAAAGTAAAADesign primers
1785169CCAAAT-CCAAAT-CAAAAT-TCAAATDesign primers
1852729CATTTGCTTTTGCATTTGCATCTGDesign primers
1852840CCTCTTGTTTTGCACGCTGTACTTCTTGTTCTGCGCGTTGTACTTCTTGTTTTGCAAGTTGTADesign primers
1862869AAAAAAAGAAAAACAAAAAACAAAADesign primers
1867167GTTTTGCAACTTTTTTAACTACTTTTTTAACTACTTTTTTAACTACTTTTTTTGCAACTTTTTTTACTGCTTDesign primers
1898096TATAT-TAAAT-TAAAT-TAAAT-TATATDesign primers
1920974CATCATCAATCATCAAAAATCAACATCACTDesign primers
2019514AAC-ATG-AAG-AAC-TTG-AAG-AAC-AAG-AAGDesign primers

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