Microsatellites /Tandem Repeats database

Genome: Streptomyces cattleya NRRL 8057 = DSM 46488

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
212233CATCCGG-CATCCGG-CATCCGG-CATCCGGDesign primers
491421CGGTCGTCG-CGGTCGTCG-CGGTCGTCG-CGGTCGTCG-CGGTCGTCGDesign primers
491467GGTCGGCGC-GGTCGGCGC-GGTCGGCGCDesign primers
894590CTCGGG-CTCGGG-CTCGGG-CTCGGGDesign primers
894638CTCGGG-CTCGGG-CTCGGG-CTCGGG-CTCGGG-CTCGGGDesign primers
1156229CCCGACCCCTGGCCGA-CCCGACCCCTGGCCGA-CCCGACCCCTGGCCGADesign primers
1276154CGCACCGCCGGAA-CGCACCGCCGGAA-CGCACCGCCGGAADesign primers
1407692CCTGGCCGC-CCTGGCCGC-CCTGGCCGCDesign primers
2322341GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGA-GCCGCGADesign primers
2513289CGGGGC-CGGGGC-CGGGGC-CGGGGCDesign primers
2613944CCGTCCGCG-CCGTCCGCG-CCGTCCGCGDesign primers
2682774CAACGG-CAACGG-CAACGG-CAACGGDesign primers
2851265AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGG-AGCCGGGDesign primers
3105140GCGGCTGATCTCAC-GCGGCTGATCTCAC-GCGGCTGATCTCACDesign primers
3154762GCGTACGGG-GCGTACGGG-GCGTACGGGDesign primers
3167723CTCCGG-CTCCGG-CTCCGG-CTCCGG-CTCCGGDesign primers
3267455ACGGGCG-ACGGGCG-ACGGGCG-ACGGGCG-ACGGGCG-ACGGGCG-ACGGGCG-ACGGGCG-ACGGGCGDesign primers
3368633CGGCC-CGGCC-CGGCC-CGGCC-CGGCC-CGGCCDesign primers
3368868TCAGCGGGC-TCAGCGGGC-TCAGCGGGCDesign primers
3774216GACCGAGGGCGTCGA-GACCGAGGGCGTCGA-GACCGAGGGCGTCGADesign primers
3841559CCGGCA-CCGGCA-CCGGCA-CCGGCA-CCGGCADesign primers
3929992CGGAGC-CGGAGC-CGGAGC-CGGAGCDesign primers
3983387GCCGGGACCGGG-GCCGGGACCGGG-GCCGGGACCGGGDesign primers
4162821CGCCGGGGA-CGCCGGGGA-CGCCGGGGADesign primers
4250028CGGCCCCGC-CGGCCCCGC-CGGCCCCGC-CGGCCCCGCDesign primers
4458394CTGCCCCGCGACGT-CTGCCCCGCGACGT-CTGCCCCGCGACGTDesign primers
5682175CCGGTCGCCGAAGCA-CCGGTCGCCGAAGCA-CCGGTCGCCGAAGCADesign primers
5699873GCCGGGGCCCG-GCCGGGGCCCG-GCCGGGGCCCGDesign primers
6081119GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAG-GCCCGGCAGDesign primers
6210754CCGAGTCCGTGCGGCCTCT-CCGAGTCCGTGCGGCCTCT-CCGAGTCCGTGCGGCCTCT-CCGAGTCCGTGCGGCCTCTDesign primers
6232985GTGCCCG-GTGCCCG-GTGCCCG-GTGCCCG-GTGCCCGDesign primers
6234953GCTGCGG-GCTGCGG-GCTGCGG-GCTGCGG-GCTGCGGDesign primers
6235154CCGCC-CCGCC-CCGCC-CCGCC-CCGCCDesign primers
6235180CGTCCCGCCT-CGTCCCGCCT-CGTCCCGCCTDesign primers
6235213CCCGG-CCCGG-CCCGG-CCCGG-CCCGGDesign primers
6238075TGCGGGC-TGCGGGC-TGCGGGC-TGCGGGC-TGCGGGC-TGCGGGCDesign primers
6280548CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-ACDesign primers
6281923CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGCDesign primers

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