Microsatellites /Tandem Repeats database

Genome: Providencia stuartii MRSN 2154

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
261753ATCAAAATCACAATCAAGATCAATDesign primers
361581TGGCGTTGTCGTTGGTGTTGGCGTDesign primers
614481TTGCCTTTTTCAATACCTTTTTCAATGCCTTTTTCADesign primers
673351AGTATTCGAATGCATTCGAAAATATTCGAADesign primers
962739AATATTCTCTGTAGTAATCTCTGTAGTAATCTCTGTDesign primers
1113262ATAGCATGAGTAACGACAATAGTATCAGTAACAACAATAGTATCAGTAACAACADesign primers
1522980GGTAACGGCGGCAATGGTGGTAACGGTGGCAATGGCGGCAACGGTGGTAATGGTDesign primers
1620962GTTGGG-GTTTGG-GTTTGG-GTTTGG-GTTTGGDesign primers
1661668CACCAGCAGCAGTACCAGCAGCAGDesign primers
1929691TTATTCCTTTAG-TTATTCCTTTAG-TTATCCCTTCAGDesign primers
1960991ATC-TTC-GTC-TTC-TTC-TTC-ATC-GTCDesign primers
2206685AGAAGCAAAAGCAGAAGCTGAAGCDesign primers
2391512CATCAAATTCATCATATTCATTAAATTDesign primers
2416077TTCGAGTTC-ATCGAGTTC-ATCGAGTTCDesign primers
2601131AAAGTTAAATTTGAAGTTAAAGGTDesign primers
2601425TGACGGTGGTGACGGCGGTGATGGTGGDesign primers
2734862TTTCTGTGG-TGTCTGTGG-TGTCTGTGG-TGTCTGTGG-TGTCTGTGGDesign primers
2794075AATATAGATATAAAAATAAATGTADesign primers
2907431CATGCCTTCTATCTTGCCTTCTATCTTACCTTCTATDesign primers
3071337TTTTCATCTTCATTATCATTTTTADesign primers
3078719TCATCTTCGTCTTCATCGTCGTCTTTATCTDesign primers
3133305ATTTTATTTTTAATGTTATTTTTADesign primers
3359761AAGGCGAAAGCGGAGAAAGAAGCGAAAGCTAAAGCGGAAAAAGAGGCGAAAGAGAAAGCGGAGAAAGAAGCGDesign primers
3359834AAGCTAAAGCAGCTAAAGAAGCTAAGGDesign primers
3511978GCTCCGCTGCAACAACCACAACCGCAGCAGCAACAACCACAACCGCAGCAGCAACAACCACAADesign primers
3523272ATTTTTTAAATTTTATTAAAAATTTTTATADesign primers
3651417TTCTCAACAACTGGCGCTGGCTCAACAACTGGAGCTGGCTCAACAACTGGTGCTDesign primers
3652045CTGCTACTGCCACTGCTACTGCGADesign primers
3676560GCTTCAA-TTTTCAA-TTTTCAA-TTTTCAA-TTTTCAA-TTTTCAADesign primers
3908224TGTGATTGCGATTTTGATGGTGATDesign primers
3933173AATACAGAGATTACTACAGAGACTACTACAGAGATTDesign primers
3941676TTGATTGATTGATTGATTGGTTGADesign primers
4017191CT-TT-AT-CA-TT-AT-CT-TT-CT-TT-TT-AT-CT-TT-GTDesign primers
4246457GGATATGGCTATGGTTATGGCTATDesign primers

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