Microsatellites /Tandem Repeats database

Genome: Sulfolobus islandicus LAL14/1

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
101740TTTTACCATTTTTCCATTTGACCADesign primers
133736GGTGGAAGAAGATATGGAAGAAGAGGCGGAAGAAGADesign primers
203907AATAAAATTAAAAATATAAGTAAADesign primers
239669TTTTTATTTTAATTTTTGTTTTAADesign primers
347699GGATTCCCCGGTTTCCCCGGATTCCCCDesign primers
365393ATAATTTAATATAGTATAATATAAADesign primers
414737ACTACAGTACTGACTATAGTACTCGCTACAGTGCTGATTACAGTACTADesign primers
414839GTACTTGTTGTAGTTGTTGTACTTGTTDesign primers
449161GAAAGGGTAAGAATAGGTAAGAAATGGTACDesign primers
451216ACGTATATACACTTTTATACATTTATATACDesign primers
466811AAG-ATG-AAG-AAG-AGG-ATG-AAG-AAGDesign primers
487049AATTAGAAGTAATTAAAAGTAAGGAGAAGTDesign primers
685903GCTAGGACTAGGGATAGGGCTAGGDesign primers
730959TATTTTAACTAGTTTAACTAGTTTAACDesign primers
946813CTCAAGCTCAAACTCAGGGTCAAGDesign primers
982804ATAAAATAAGACAAAATAACATTAADesign primers
1011301CACCTATTAACAACTATTTACACCATTTAADesign primers
1245575TATAGT-TATAGT-TTTAGT-GATAGTDesign primers
1373648GAGAAAGAGAGAGAAAAAGGGAAADesign primers
1421561TTATATTTAATTTTATTTCATTATATGTTADesign primers
1494160GTCGTTGTAGAAGTTGTTGTAGTAGTTGTTGTAGAGDesign primers
1514579AATAGAATTAGAAAGAGAAGTAGADesign primers
1609226AAATAATGGAAATACTGGAAATAATGADesign primers
1691806CTTAAATCTTCTTCAGTCTTCTTTAACCTTDesign primers
1724635AAAGAAATTAAACGGAATTATAAGAAATTCDesign primers
2050296CAACAACACCAACCACAACAACCADesign primers
2143484AGTAATCGTAATAGTGATAATAATDesign primers
2190253TA-TA-AA-TA-TA-TA-AA-TA-AA-GA-TA-AADesign primers
2191921TTTCTCTTCTTATCTTATCTTTTATDesign primers
2207234TTAGAAGTAATTAAAAATAATTAGCAGTTADesign primers
2223792CTTCTTCTTTTTCTTCTCCTCCTTDesign primers
2247081ACTAAT-ATTAAT-ATTAAT-ATTAATDesign primers
2364020CTTCTTCAACTACAACTTCTTCACTTACTACTACAACAACTACAADesign primers
2364096AACTACTACTACTACTACAACAACAACTACDesign primers
2364210AAGAGG-AAGAGG-TAGAGG-AGGAGGDesign primers
2409248TATTTTTATTTCCATTTTTATTATDesign primers
2428663GAAAAAGAAGAACAAAAAGGAAAADesign primers
2436743TAAAAG-TAAAAG-TAAACG-AAAAAGDesign primers

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