Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Sulfolobus islandicus LAL14/1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
101740	TTTTACCATTTTTCCATTTGACCA	Design primers
133736	GGTGGAAGAAGATATGGAAGAAGAGGCGGAAGAAGA	Design primers
203907	AATAAAATTAAAAATATAAGTAAA	Design primers
239669	TTTTTATTTTAATTTTTGTTTTAA	Design primers
347699	GGATTCCCCGGTTTCCCCGGATTCCCC	Design primers
365393	ATAATTTAATATAGTATAATATAAA	Design primers
414737	ACTACAGTACTGACTATAGTACTCGCTACAGTGCTGATTACAGTACTA	Design primers
414839	GTACTTGTTGTAGTTGTTGTACTTGTT	Design primers
449161	GAAAGGGTAAGAATAGGTAAGAAATGGTAC	Design primers
451216	ACGTATATACACTTTTATACATTTATATAC	Design primers
466811	AAG-ATG-AAG-AAG-AGG-ATG-AAG-AAG	Design primers
487049	AATTAGAAGTAATTAAAAGTAAGGAGAAGT	Design primers
685903	GCTAGGACTAGGGATAGGGCTAGG	Design primers
730959	TATTTTAACTAGTTTAACTAGTTTAAC	Design primers
946813	CTCAAGCTCAAACTCAGGGTCAAG	Design primers
982804	ATAAAATAAGACAAAATAACATTAA	Design primers
1011301	CACCTATTAACAACTATTTACACCATTTAA	Design primers
1245575	TATAGT-TATAGT-TTTAGT-GATAGT	Design primers
1373648	GAGAAAGAGAGAGAAAAAGGGAAA	Design primers
1421561	TTATATTTAATTTTATTTCATTATATGTTA	Design primers
1494160	GTCGTTGTAGAAGTTGTTGTAGTAGTTGTTGTAGAG	Design primers
1514579	AATAGAATTAGAAAGAGAAGTAGA	Design primers
1609226	AAATAATGGAAATACTGGAAATAATGA	Design primers
1691806	CTTAAATCTTCTTCAGTCTTCTTTAACCTT	Design primers
1724635	AAAGAAATTAAACGGAATTATAAGAAATTC	Design primers
2050296	CAACAACACCAACCACAACAACCA	Design primers
2143484	AGTAATCGTAATAGTGATAATAAT	Design primers
2190253	TA-TA-AA-TA-TA-TA-AA-TA-AA-GA-TA-AA	Design primers
2191921	TTTCTCTTCTTATCTTATCTTTTAT	Design primers
2207234	TTAGAAGTAATTAAAAATAATTAGCAGTTA	Design primers
2223792	CTTCTTCTTTTTCTTCTCCTCCTT	Design primers
2247081	ACTAAT-ATTAAT-ATTAAT-ATTAAT	Design primers
2364020	CTTCTTCAACTACAACTTCTTCACTTACTACTACAACAACTACAA	Design primers
2364096	AACTACTACTACTACTACAACAACAACTAC	Design primers
2364210	AAGAGG-AAGAGG-TAGAGG-AGGAGG	Design primers
2409248	TATTTTTATTTCCATTTTTATTAT	Design primers
2428663	GAAAAAGAAGAACAAAAAGGAAAA	Design primers
2436743	TAAAAG-TAAAAG-TAAACG-AAAAAG	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

101740

TTTTACCATTTTTCCATTTGACCA