Microsatellites /Tandem Repeats database

Genome: Methanospirillum hungatei JF-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
418505TGATTATGATTCAGATTATGATTADesign primers
428617AACAAAAATAAAAACCAAAATAAADesign primers
562922CACTCCAACTCCCAGTCCGACTCCDesign primers
563030CACTCCAACTCCCAGTCCGACTCCDesign primers
646248CGTCC-CGTGC-TGTCC-CGTCC-CCTCCDesign primers
869511CCTGGTTCACAAATT-CCATGTTTACAAATT-CCATGTTTACAAATT-CCATGTTTACAAATTDesign primers
923104ATGAT-ATGAT-ATGGT-ATGAA-AAGATDesign primers
961030GCATAGTGAAGCAGAATGAAGCAATGTGAADesign primers
1342856AGT-AGC-AGT-AGA-AGT-GGC-AGC-AGC-AGC-AGCDesign primers
1392243TTACCTTTCTCG-ATTCCTTTCTCG-ATTCCTTTCTCG-ATTCCTTTCTCGDesign primers
1394509GTTTTCCTTCTTGTCTTCCTTCTTGTCTTCCTTCCTDesign primers
1396750GTTTTCCTTCTTGTCTTCCTTCTTGTCTTCCTTCCTDesign primers
1468966TTTCTCCTTCTCTTCCTCTGTCTCDesign primers
1595421CAGATA-CAGATA-CGGATA-CAGATADesign primers
1599176TAAGGCTGAAGGGAAAGCTGAAGGGAAAGCTGAAGGDesign primers
1729614TTCCGGAAATG-ATCCGGAAATG-ATCCGGAAGTGDesign primers
1885235AACTGCTACAACTGTTACAACTGTTACDesign primers
1886360AACTGCTACAACCGCTACAACTGTTACDesign primers
1918667TACAGAAGGAGACATTAGGACTTCAAAAGGAAACATTAGAACTTCAGAAGGAAACATTAGAACDesign primers
2075876ATATTTTTTTATAAATTTTTTTATTTTCTTDesign primers
2125884TCAAAAAATCTATAAAAATCTATAAAAATCDesign primers
2145797AGGGACTAAGTAGGGACCAAGTTGGGACCAAGTCGGGACTCAGTDesign primers
2169371TGGTTTTGCTTTTGGTTGTGGCTTDesign primers
2329978ATACAAAATTATGCAAAAATATACATAATTDesign primers
2408497TTTCTTTGCTCTTCTTTTCATTTTTDesign primers
2670495AGAAGGAAAAGCAGAAGGGAGAGCAGAGGGGAAAGCDesign primers
2673893TGCTACAACTGTTACAACTGCTACATCDesign primers
2688459CTTCTCTTTCTTCTTCCCTTCCTTCTTCCCTTCCTTDesign primers
2733770ACATTG-ACATTG-ACCTTG-ACTTTGDesign primers
2920464CT-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AADesign primers
2924035TCTTTGCATTCTTTCCATTCTTTGCATDesign primers
2970586GGAAGAGAAGAAGGAAGAATAGAAGGAAGAATAGAADesign primers
2995679TCTTTCCCTTCTTTCCTTTCTTTCCTTDesign primers
3031013CAGAAGAAAGAGAAGGAGAAAGAGAAGGAGAAAGAGDesign primers
3304337AGTCGGAGTAGGGGTCGGTGTCGGDesign primers
3344237TGGTTCGCCAACATCTGATCC-TGTTTATCCAGCATCTGATCC-TGTTTATCCAGCATCTGATCC-TGTTTATCCAGCATCTGATCC-TGTTTATCCAGCATCTGATCC-TGTTTATCCAGCATCTGATCC-TGTTTATCCAACATCTGATCC-TGTTTATCCAACATCTGATCCDesign primers
3407668AGGAGACGGATAAAAGATTCAAAGAGACTGATAAAAAATTCAAAGAGACGGATAAAATACTGADesign primers
3408529AGGAGACGGATAAAAGATTCAAAGAGACTGATAAAAAATTCAAAGAGACGGATAAAATACTGADesign primers
3422393AAATGTTGGAGAAACAGGATCGGATGCTCGAGAAACAGGATCAAATGCTCGAGAAACAAGATGDesign primers
3424537CTTTTTGGATCTTTTCAGATATTTTTGGGTDesign primers
3458062GATGCTTGAAAAACAGGACCAGATGTTGCAAAAACAAGACCAGATGCTTGAAAAACAAGACCADesign primers

Please help us improve this resource by reporting problems, suggestions etc.