Microsatellites /Tandem Repeats database

Genome: Burkholderia cenocepacia MC0-3 chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
18448AAAGGAGGATAGGAGGAAAGGAAGDesign primers
58737CGGCGGCAATGGCGGGGGCAACGGCGGGGGCAACGGCGGCGGTCATGGDesign primers
76805CGACCGCGACGGCCACCGCGACCADesign primers
86820GCGGTCGCGGCGTTCGCGGCGGTCCCGDesign primers
119368GCTCGTGCTCGCGCCCGTGCTCGTDesign primers
163491CCGGTC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACC-ACGACCDesign primers
175553CGTGTTTC-GGTGTTTC-GGTGTTTC-GGTGTTTCDesign primers
175586ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCG-ATGTTTCGDesign primers
193839TGGCTCG-CGGCTCG-CGGCTCG-CGGCTCGDesign primers
193875GCTCCG-GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAA-GCCCAADesign primers
193946AGCCCCC-GGCTCCC-GGCTCCC-GGCTCCC-GGCTCCC-GGCTCCC-GGCTCCC-GGCTCCCDesign primers
254283CCGGGCG-GCAAGCA-CCAAGCA-CCAAGCA-CCAAGCA-CCAAGCA-CCAAGCA-CCAAGCA-CCAAGCADesign primers
256094CGGCGCCTGGC-CGGCAACCGCC-CGGCAACCGCC-CGGCAACCGCC-CGGCAACCGCC-CGGCAACCGCCDesign primers
256161GGCAACCGCCC-GGCAACCACCC-GGCAACCACCC-GGCAACCACCCDesign primers
264658CCGCGCCGGCCGCGCAGGCGGCGCCGGDesign primers
264758CGCGCCGCCGCCGGCCGCGCCGCAACCGGCTGCTCCGGCGCCGGCDesign primers
279530AGCGCCGGCCGCCGGGTCGCCGGCCCCCGGATCGCCGGCCGCCACDesign primers
305012GCCGGCACCGGCGCCCGCGCCGGADesign primers
322817TGCGTCTGCGGCAGCGTCTGCGGCDesign primers
452702GCGTCGCGTTGCCTCGCATCGCGACDesign primers
504948ACGCATCAACGCCTCAACGCAGCADesign primers
571220CGTAACGCACGCAACGCACGCAACGCADesign primers
571404TCACCGAT-CCACCGAT-CCACCGATDesign primers
624426GCTCCGGCGAAGAAGGCCGCGGTGAAGAAGGTTGCTGCGAAGAAGDesign primers
624508CGGCGAAGAAGGCCGCTGCAAAGAAGGTCGCAGCCAAGAAGGTCGDesign primers
624554AACGAAGAAGGTTGCAGCCAAGAAGGTCGCAGCGAAGAAAGTCGCGGTGAAGAAGGTTGCDesign primers
624648GCGAAGAAGGTTGCAGCCAAGAAAGTCGCAGTGAAGAAGGTTGCTGCGAAGAAGGCCGCGDesign primers
624790CTGCGAAGAAGGCTGCGCCCGCCAAGAAGGCTGCCCCTGCGAAGAAGGCTGCCGDesign primers
668353CGGATCGCCGGATTGCCGGACCGCDesign primers
669171CG-AC-CG-CG-CG-GC-CG-CG-CG-AG-CG-CGDesign primers
688827CTCGGCCTCGGTCTCGTCGTCGGCDesign primers
697283CGTCCCCGACCGGGCGTCCCTGACCGGGCGTCCCTAACCGGGDesign primers
698893CACGGGTGCGCGCGTGTGCGAACAGGTGCGDesign primers
699353TGATCGCGATCGTGATCGGGATCGDesign primers
763476GGCACGGGCAAGGGCAAGGACACGDesign primers
797054GGTGCGGCCGGCGCGGCCGGTGCGGCGDesign primers
800315CCGGCGTGCTGCCGGGCGTGATGCGCGGGGTGCTGCDesign primers
879884GCGCGC-CAACGC-CAACGC-CAACGC-CAACGC-CAACGC-CAACGC-CAACGC-CAACGCDesign primers
968944TGCTGA-TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCG-TGATCGDesign primers
1015982TTCCTCTTCGTCGTCTTCGTCTTCCTCTTCGTCCTCGTCGTCGCCDesign primers
1039056GACGTGTGTAACAGACGCGTGTAACAGACGCGGGTAACADesign primers
1045214CGCC-CGCC-GGCC-CGCC-CGCC-TGCCDesign primers
1071295GATCACCGCGCCGATGACCGCGACGATCACCGAGCCDesign primers
1075647GGTCGAGATCGAGCTCGAGGCCGADesign primers
1076964GTCCCTGGGGTCCGTGGGGCCCCTGGGDesign primers
1087566GGCGCAGGAGCAGGCCCAGGCGCTDesign primers
1110298GCGCATGCGCAGGCGCTTGCGCAADesign primers
1152111TGATGTTGGTGATATTGGTGATGTTCGDesign primers
1159403CCTTGCCCTTGTCCCTGCCCCTGCDesign primers
1175009GCGGCGGCCGCGACGGCGACGGCGDesign primers
1175297TTCGCGCGGCTCACGGCCTTCACGCGGCTCGCGACCTTCGCGCGGGCCACGGCCDesign primers
1181202CGCTGAC-GGCTGAC-GGCTGAC-GGCTGACDesign primers
1195494TCGGCTTCGGTTTCCGCTGCGGCTDesign primers
1246249CGGGAAAG-CGGGAAAG-CGGGACAGDesign primers
1246280GCTGGACG-GCGGGACG-GCGGGACG-GCGGGACGDesign primers
1246313CGGGACAA-CGGGACAA-CGGGACAA-CGGGACAA-CGGGACAA-CGGGACAGDesign primers
1262971CGGGCGACGCGGCCGACGCGGGCGGCGDesign primers
1305181GCGGCCGTGGCCGCAGCCGAGGCCDesign primers
1312379CGATCCGCGATCCTCGATCGGTGATCCGCGATCGGDesign primers
1317139GGCGCGATGAAGAAGGACGGCATGAAGAAGCACGCGATGAAGAAGDesign primers
1320879GCTACGGCCACCGCTCCGGCTACCGCTCCGGCTACCDesign primers
1325215CGCGAGCGCGCGCGCCAGCGCGACDesign primers
1340666TCGGCGTCGACGTCAGCGTCGTCGDesign primers
1360233CCTGATCGTGATCCTGATCCTGATDesign primers
1383503CATCCTGTTCTTCATCTCGTTCTTCATCCAGTTCGTDesign primers
1449885GTTCGCGGCGTTCGCGGTGTTGGCGGCDesign primers
1488715GCGATCACGATCGCGAGCGAGATCDesign primers
1520031TCGCGATCGCGGTCGAGATCGCGGDesign primers
1542419CAACGCGTCGACGCGTCAACGCATDesign primers
1557820GCTGTGTCGCGCTCCGTCGCGGTTTGTCGCDesign primers
1606317GCCGCCGCCCGAACCGGCGCCCGAGGCGCCGGCCGADesign primers
1657195GCCCGAGGTGCCGCTGGTGCCCGACGTGCCGCTCGTACCAGAGGTTCCGCTGGTDesign primers
1657268CCGCTCGTGCCCGAAGTACCGCTGGTGCCGGAGGTACCGCTCGTACCCGAGGTGDesign primers
1761992GCGCTGTCGCTGGTGCTGGCGCTTDesign primers
1850162TCGCGATCGCGCGCGCGATCGTGADesign primers
1933976CGGCGCCGGCGGCGGGGCCGGCTCDesign primers
2012968TTCTGCATCTGCTCCTGCATCTGCDesign primers
2032466AGCACGAGCCCGAGCACCATCACGDesign primers
2076660CGGCGCGATCGGCGCGAGCGCCGCGATDesign primers
2077816GCGACGACGTCGGCGACCACGTCGACCACGACGTCGDesign primers
2172230TCGCGCCGCGGCGCGTCGCCGCGCGDesign primers
2202375CCGTAGCGGGACCGTAGCGGAACCGAAGCGGAADesign primers
2286541GCGTCGAGGCGTCGGGGCGTCGGGDesign primers
2316824GGCGCCGGCGCGTACACGGGCGCCGGTGCATAGACGGGCGCCGGCTGGTAGACGDesign primers
2372496GCCGCGGCCGGACCGCCGCCGGGTCGCGGCCGGDesign primers
2378906CCGCGCCGCGCCCGGCCGCGCCGCACCGCCDesign primers
2447749GCGCCGCGTCGAGCCACGCCGCGTCDesign primers
2467150CTGCCGCTGCCCCCGCCGATGCCGDesign primers
2563617CCGCTGCCGCTTCCCCTGCCGCTGDesign primers
2598577CCC-CGC-CGC-CGC-CTC-CGC-CCC-CGCDesign primers
2615707CCGCCGCGTTCGCCACCCCGTTCGCCGCCGCGCTCADesign primers
2617044GCCGC-GGCGC-GCCGC-GCGGC-GCCGCDesign primers
2705163GTCGAA-GTCGAA-ATCGAA-GTCGACDesign primers
2712276CGCGG-CGCAG-CGCAG-CGCCG-CGCCGDesign primers
2716615ACCGCAGTTCCCGCAGTTTCCGCAGTTDesign primers
2767668ACGCGACGCTGCGCGACACGCCGCGDesign primers
2799352GACGCC-GACGCC-GGCGCC-GTCGCCDesign primers
2832306GCCAC-GCAAC-GCAAC-GCCGC-GCAACDesign primers
2852208GCTCGGGTGGCGGTA-CTTCGGGTGGTGGTA-CTTCGGGTGGTGGTA-CTTCGGGTGGTGGTA-CTTCGGGTGGTGGTA-CCTCGGGTGGTGGTADesign primers
2852309GGCACTTCCGGCGGCGGCACCTCGGGTGGCGGCACTTCGGGTGGCGGCACTTCGGGTGGCGGTACTTCGGGTGGCGGTACTTCCGGTGGCGGTACTTCCGGTGGCGGTACTTCCGGTGGCGGTACTTCCGGTGGCDesign primers
2852447ACTTCGGGTGGAGGCACCTCAGGTGGCGGCACCTCGGGTGGCGGTDesign primers
2852747AACGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
2852788CGG-CAA-CGG-CGG-CGG-CGG-CGG-CGG-CGG-TGG-CGG-CGG-TGG-CGG-CGGDesign primers
2852834GGCGGCGGTGGCGGCGCCGGCGGCDesign primers
2852864GGCAACGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTDesign primers
2852950CGGCGGCAACGGCGGCGGCGGCGGCGGCGGCCATGGDesign primers
2853016CGGCAA-CGGCAA-TGGCAA-CGGCAGDesign primers
2853047GCCGGCAACGGCGGCGCCAACGGCGTCGGCAACGGCDesign primers
2885318CCG-CGA-CGA-CAG-CGA-CGA-CGG-CGA-CGADesign primers
2889074GCCGGGCCACGAAAGGCTGAGCCACGAGAGGCCGGGCCGCGATGGDesign primers
2910788GCTCGGCGCGGCACGGCTCGGCTGGDesign primers
2913526AATCCGAGTCCGAAACCGAATCCCDesign primers
2926413AGCACGATCACGAACACGAGGACGDesign primers
2987040GTGCGATCGCCCGGGGCACGTTCGCCCGGGGCGCGATCGTCCGGGDesign primers
3103334CGCATTCACGCGCGCCTTCACGCGCGCATTTGCGCGDesign primers
3119871CGCTCGCCGCGGTCGCCGCGCTCGCGGDesign primers
3154949TCGTCATTAATCGTCGTTAATCGTCGTTGADesign primers
3199808GGCGCGGCCGGGGCGGCCGGCGCGGACDesign primers
3291222GCCGCGGACGTCAGCCGCGAACGTCAGCTGCGGACTTCADesign primers
3328464GGGCCGC-CTTCCGC-CTTCCGC-CTTCCGC-CTTCCGC-CTTCCGC-TTTCCGC-CTTCCGC-TTTCCGCDesign primers
3328528TTCCGCT-TTCCGCT-TTCCGCT-TTCCGCC-TTCCGCCDesign primers
3366487ATGGT-GCGGT-GCGGT-GCGGT-GCGGT-GCGGTDesign primers
3366548CGGCTTG-CCGCTTG-CCGCTTG-CCGCTTG-CCGCTTG-CGACTTG-CGGCTTGDesign primers
3371494ATCGCGTTCGCGAGCGCGGTCGCGDesign primers
3388572CGCGCCTGCTACTTGCCTGCTACTTGCCTGCTADesign primers
3395303GCCGC-GCCGC-GCGGC-GCCCC-GCCTCDesign primers
3414808GCCCGTTTTGCGCCCGCTTTACTCCCGTTTCGCDesign primers
3424964CCC-GCC-GCC-GCC-CCC-GCC-GCC-GCCDesign primers
3444179CGCGCTGCTCGCGCTGCGCGCGCCGCTDesign primers
3447513CAC-GAC-CAC-GGC-CAC-CAC-CAC-CACDesign primers
3492142CACCGGCCCGCAAGACCGCCGCCCGCAAGACCACGGCGCGCAAGADesign primers

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