Microsatellites /Tandem Repeats database

Genome: Paenibacillus polymyxa E681

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
143804TCCTCTCAAATTGGCACCTCTAAGATTGGCGCCTCTCAAATTTGCDesign primers
146370TTTTCACCACAGCCGTTCTCACCACAGCCGTTCTCACCGCCGCCGDesign primers
302420GATTCATAGTTTCATAGATTCATADesign primers
430683GGGGAACCAGGTGAACCAGGTGAACCADesign primers
436020CAAGGATAAGGACAATGACAAGGADesign primers
540870GACGGATCAGGCTTTGTAGATGGATCAGGCTTAGTAGACGGATCCGGTGTTGTADesign primers
540955TTGTAGATGGATCAGGTGATGTAGACGGATCAGGCGTTGTAGATGGATCTGGTGTAGTAGATGGATCAGGCTTAGTAGACGGATCCGGTGDesign primers
613587AAAAATAAAAAAATTAAATAATAADesign primers
668308CTCCCGTAACTCCTGTAACGCCCGTAADesign primers
668569GCCCTGGAGGCCCTGTAGGCCCTGGGGDesign primers
709162CAAGAATCATTCACGATACCAATCATTCACGACGAAAATGATTCACGACACAAATGATTCACGADesign primers
1120691CGTCATAAAGCTGTCGTAAAGCCGTTGTAAAGCDesign primers
1329195TTGTAAGTGATTATAAGTAAATGCAAGTGADesign primers
1350635CGTCATCAT-CGCCATCAT-CGCCATCAT-CGCCATCATDesign primers
1367760GATACGGTGATACAGTGATACAGTDesign primers
1436908GA-CA-AA-GA-AA-GA-CA-AA-AT-AA-CA-CA-AA-AA-AADesign primers
1444636GCAATTGCAAATGCAGTTGCAAATDesign primers
1447704AAAAATAAGCAAACATAAGGATAAAAAAGCDesign primers
1608457ATAATCAACA-TTAATCAACA-TTAATCAATADesign primers
1667078TCCTTTGTCTTATTCTCTGTCTTATTCTCTGTCTTADesign primers
1686015TGCAGGTGCAAGTGCAGATGCAGADesign primers
1943074AAAAAACAAAATAAACAAAAATAAADesign primers
2079731ATTACAACACCA-AGCACAACACCA-AGCACAACACCA-AGCACAACACCADesign primers
2322747CAATCGACAACCAACCCACAACCAACCCACAACDesign primers
2659296TTTTTCTCAGAACTATATTCTCAGAACTATATTCTCAGAACTDesign primers
2715074CATGGGCTG-CATGGGTTG-CTTGGGTTG-CATGGGCTG-CATGGGCTG-CATGGGTTGDesign primers
2797447CGTGCTGT-AGTGCTGT-AGTGCTGTDesign primers
2802659ATTTAGTTGATTTTAGTTAACTTTACTTGADesign primers
2833423ATGTGG-ATGCGG-ATGTAG-ATGTAG-ATGTAG-ATGTAGDesign primers
3029563CACGAGGTGCACGAGATGCACGTGGTGDesign primers
3271621TCATACGTT-TCATACGTT-TCATTCGTTDesign primers
3725555GTATTTTT-ATATTTTT-ATATTTTTDesign primers
3794141TCTGGCTCCGGCTCTGGTTCTGGTTCTAGCDesign primers
4146670CTACTGGTGCTACTGGCGCTACAGGTGDesign primers
4683209ATGCTT-ATTCTT-ATTCTT-ATTCTT-ATTCTTDesign primers
4770878TCTGTAGTGCTA-TCTGTAGTGCTA-TCTGTAGTCGTADesign primers
4900230TCATATCAGATCATCCCATATCTTADesign primers
4943555ATGAATATGGATATAAATATGACTDesign primers
4952585AATGATAATGAGAATCATAATCATDesign primers
4971790GTGATCATGATCGTGATGGTGATCDesign primers
5241248TCAAGCTTAAAACAAGATTAAAGCAAGCTGAAADesign primers

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