Microsatellites /Tandem Repeats database

Genome: Xanthomonas axonopodis Xac29-1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
11189CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
95515TGCATC-TACATC-TACATC-TACATC-TACATC-TACATCDesign primers
104798CGCCAA-CGCCAA-CGCCAA-CGCCAADesign primers
105599TTGGCACG-CAGGCACG-CAGGCACG-CAGGCACG-CAGGCACG-CAGGCACG-CAGGCACG-CAGGCACG-CAGGCACGDesign primers
242951TTGCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCT-TCCCGCTDesign primers
243041TTCCCCA-TTCCCCA-TTCCCCA-TTCCCCA-TTCCCCADesign primers
330172CCACAC-CGACAC-CGACAC-CGACAC-CGACAC-CGACACDesign primers
397612ACAGCGACG-ACAGCGACG-ACAGCGACGDesign primers
538028CCAATCC-CGAATCC-CGAATCC-CGAATCC-CGAATCC-CGAATCCDesign primers
566816GAGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
594546GCGAGCG-GCGAGCG-GCGAGCG-GCGAGCGDesign primers
601597CCGCAGC-CCGCAGC-CCGCAGC-CCGCAGC-CCGCAGCDesign primers
618528CGACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACAC-CAACACDesign primers
618583CAGCA-CAGCA-CAGCA-CAGCA-CAGCADesign primers
767581ACTGCC-ACTGCC-ACTGCC-ACTGCCDesign primers
774762ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
780358GGCAAC-AGCAAC-AGCAAC-AGCAAC-AGCAAC-AGCAACDesign primers
780768CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
820101AACAGCCAACAGCCAACGGCCAACAGCCAACAGCCAACAGCCAACAGCCAACGGCCDesign primers
820161GCCAACG-GCCAACA-GCCAACA-GCCAACA-GCCAACA-GCCAACADesign primers
873244CCGCCA-CCGCCA-CCGCCA-CCGCCADesign primers
875991ACCGCC-ACCGCC-ACCGCC-ACCGCC-ACCGCCDesign primers
876376CCG-CCG-CCG-CCG-CCG-CCG-CCG-CCGDesign primers
876401CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGCDesign primers
904217CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1014647TGCATC-TGCATC-TGCATC-TGCATCDesign primers
1069759TTTCCGA-TTTCCGA-TTTCCGA-TTTCCGA-TTTCCGADesign primers
1104659CCACGCCGG-CCACGCCGG-CCACGCCGGDesign primers
1202155ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
1445046TGCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGADesign primers
1445131TCCCGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGAT-TCCCGATDesign primers
1463468CGCGCGGCGC-CACGCGGCGC-CACGCGGCGC-CACGCGGCGCDesign primers
1480655TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
1494957ACGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
1538844CCATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1554760CGGGCG-CGGGCG-CGGGCG-CGGGCGDesign primers
1593584GCTGACGT-GCTGACGT-GCTGACGTDesign primers
1597716GCGTCACT-GCGTCACT-GCGTCACTDesign primers
1641755CGGGAAT-CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
1653293ACCGCTGCA-ACCGCTGCA-ACCGCTGCADesign primers
1704150CCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCA-TCGGCADesign primers
1725524TCGCCTCCA-TCGCCTCCA-TCGCCTCCA-TCGCCTCCADesign primers
1821047CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1888477TTTCCCG-GTTCCCG-GTTCCCG-GTTCCCG-GTTCCCG-GTTCCCGDesign primers
1888520ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGADesign primers
1899129CACACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACC-AGCACCDesign primers
2258201CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
2267743ACGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTC-CCGATTCDesign primers
2281656TTGACC-TTGACC-TTGACC-TTGACCDesign primers
2287883TGGCTG-TCGCTG-TCGCTG-TCGCTG-TCGCTG-TCGCTG-TCGCTG-TCGCTGDesign primers
2332546CCGCTTC-CCGCTTC-CCGCTTC-CCGCTTCDesign primers
2332575CGATTCC-CGCTTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
2332618GCTTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCC-GATTCCCDesign primers
2489848CGACAC-CGACAC-CGACAC-CGACACDesign primers
3048461TGCCGG-TGCCGG-TGCCGG-TGCCGGDesign primers
3117514GGCGGCGGT-GGCGGCGGT-GGCGGCGGTDesign primers
3365652GCCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGA-TTCGGGADesign primers
3365739GGGATTT-GGGATTT-GGGATTT-GGGATTTDesign primers
3370359ACC-ACC-TCC-ACC-ACC-TCC-ACC-ACC-TCCDesign primers
3457587TATTGC-CATTGC-CATTGC-CATTGC-CATTGC-CATTGCDesign primers
3480336GGGATTC-GGGATTC-GGGATTC-GGGATTCDesign primers
3583103CGTGCTGT-CGTGCTGT-CGTGCTGTDesign primers
3661257TTCGGGA-ATCGGGA-ATCGGGA-ATCGGGA-ATCGGGA-ATCGGGADesign primers
3822950TGGGTCCCCAAGCTGTTC-CGGGTCCCCAAGCTGTTC-CGGGTCCCCAAGCTGTTC-CGGGTCCCCAAGCTGTTC-CGGGTCCCCAAGCTGTTCDesign primers
3929216CGGGAAT-CGGGAAT-CGGGAAT-CGGGAATDesign primers
3974581CGGTAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCAT-CGGCATDesign primers
4001438GGGGGGATCGCT-GGCGGGATCGCT-GGCGGGATCGCT-GGCGGGATCGCTDesign primers
4112162GCATC-GCATC-GCATC-GCATC-GCATCDesign primers
4130148CCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAA-TCGGGAADesign primers
4214658ATTCCCG-ATTCCCG-ATTCCCG-ATTCCCGDesign primers
4375364CGGGATT-CGGGATT-CGGGATT-CGGGATTDesign primers
4375393GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTG-GCGGTTGDesign primers
4437221CGCAGG-CGCAGG-CGCAGG-CGCAGGDesign primers
4502925GTCGGT-GTCGGT-GTCGGT-GTCGGT-GTCGGTDesign primers
4512801CCAGAA-CCAGAA-CCAGAA-CCAGAADesign primers
4631261TGCCGG-TGCCGG-TGCCGG-TGCCGG-TGCCGGDesign primers
4727730TTGCGTTGTGGCGATG-GTGCGTTGTGGCGATG-GTGCGTTGTGGCGATG-GTGCGTTGTGGCGATGDesign primers
4735243AGTCAT-GGTCAT-GGTCAT-GGTCAT-GGTCAT-GGTCATDesign primers
4798521TGGTGAT-TGGGGAT-TGGGGAT-TGGGGAT-TGGGGAT-TGGGGATDesign primers
4873325GCGGAT-GCGGAT-GCGGAT-GCGGAT-GCGGATDesign primers
4922086CCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGT-GCGTTGTDesign primers
5060000TGGGATT-GGGGATT-GGGGATT-GGGGATT-GGGGATT-GGGGATTDesign primers
5065293TTGCTG-TTGCTG-TTGCTG-TTGCTGDesign primers

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