Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes strain J2-1091

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
327667ATTGTTTTTGTTATTGGTGTTGTTDesign primers
443971GATGAAGACGAAGATGACGATGATDesign primers
606429TAAAAAAGTAAAATAGTAAAAGAGDesign primers
618817AAGAAACATTAATAAACAATAAGAACCTTTDesign primers
630318ATGCTAGATTCAACA-AAACTAGATTCAACA-AAATTAGATTCAACADesign primers
674182AAGCAAAAGCAGAAGGAAAAGCAADesign primers
1023907AGAAAAAGCAGATAAAGCAGAAAAAACDesign primers
1062801AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
1092618TTTGTATTAGTATTGGTATTTTTADesign primers
1142066GACACCAAAAGATACACCAAAAAATACACCAAAAGADesign primers
1168567TTCAGGAGC-CTCAGGAGC-CTCAGGAGCDesign primers
1191427TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
1423860AGAACAAAAACAACAACAAGAAAADesign primers
1456149AAAAAGAAGAAGAAAACGAAACAGDesign primers
1580105TTTTTTTATTTTTTATCTTTTTTATDesign primers
1589949ATAAAAGAAATAAAACAAATACAAGAADesign primers
1593446TGCACATGTACATGTACATGCGCADesign primers
1617073ACCCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1617220CCGGTAGACCCAGTAGACCCGGTAGACDesign primers
1765385CCCAACGCCAAATCCAACACCAGATCCGACGCCAAATCCAACACCAACACCAACACCAGATCCAACACCGGADesign primers
1852000TTTTTTTTATTTTTCTTTCTTTTGTDesign primers
2091796GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTDesign primers
2317035CATCCGCATCGGCATCCGCATCGGCATCGGDesign primers
2317066GTCGGCATCAGCATCGGCATCGGCATCCGCATCAGCATCCGCATCAGCGTCGGCATCTGCGTCGGCATCAGADesign primers
2317491CGTCGGCATCGGCATCGGCGTCAGDesign primers
2317516ATCCGCATCAGCATCGGCATCGGCDesign primers
2317541TCAGCATCCGCATCGGCGTCGGCATCCGCATCGGCGTCAGCATCCGCATCGGCGTCGGCATCCGCATCAGCGDesign primers
2317614CGGCAT-CAGCAT-CCGCAT-CCGCAT-CAGCAT-CAGCATDesign primers
2317651AGCGTC-GGCATC-AGCGTC-AGCGTC-AGCATC-CGCATC-GGCGTC-GGCATC-AGCATC-GGCGTC-GGCGTC-AGCATCDesign primers
2317724GCATCGGCGTCAGCATCCGCATCGGCGTCAGCATCAGCATCAGCATCAGCATCAGCATCAGCGTCAGCGTCCGCATCAGCGTCGGCATCGDesign primers
2317815CATCAGCATCCG-CATCAGCATCCG-CATCAGCATCAGDesign primers
2317852GTCCGC-ATCAGC-ATCAGC-GTCCGC-ATCAGC-GTCCGC-ATCAGC-ATCAGC-ATCAGC-GTCCGC-ATCAGC-GTCGGC-ATCCGC-ATCAGC-ATCCGCDesign primers
2317943TCGGCGTCCGCATCAGCATCGGCGTCAGCGTCAGCATCGGCGTCAGCGTCAGCADesign primers
2317998CCGCATCAGCATCAGCGTCAGCGTCCGCATCAGCATCAGCATCAGCGTCCGCATCAGCGTCGGCATCAGCATCAGCATCAGCATCAGCGTCGGCATDesign primers
2318096GCGTCAGCATCCGCATCGGCATCCGCATCAGCATCCDesign primers
2318138GCATCAGCGTCGGCGTCGGCGTCAGCATCCGCATCAGCATCGGCGTCAGCATCGGCGTCAGCGTCCGCATCADesign primers
2318213TCGGCA-TCGGCA-TCAGCA-TCAGCA-TCCGCA-TCCGCA-TCAGCA-TCCGCA-TCCGCA-TCAGCADesign primers
2318274CAGCGTCGGCATCAGCGTCAGCATCCGCATCGGCGTCAGCATCGGCATCGGCATCGGCGTCAGCATCGGCGTCAGCATCCGCATCAGCGTDesign primers
2318387TCGGCATCCGCATCCGCATCGGCGTCAGCATCCGCADesign primers
2318426GCGTCGGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCGGCGTCGGCATCAGCGTCGGCATCAGCATCAGCGTCAGCATCGGCGTCAGCGTCGGCATCCCCAACADesign primers
2464587TCAGCTTTTTCAGCAGCAGCTTTCTCGGCAGCAGCTTTCTCGGCAGCAGCTTTGTCAGCCDesign primers
2550002TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2716031CAAGCAACAAAAACAGCAACAAAACAAGCAACAAAADesign primers
2740828TATGAAAAAACGATGAAAAAGCTTTAAAAAAACDesign primers
2767059AATAAGGAAAATAAAGGAAAAATCTGGAAADesign primers
2839924TTG-GTT-CTT-CTT-TTG-GTT-CTT-CGA-TTT-TTT-CTT-CTTDesign primers
2877060TGA-TGA-TGA-TGA-TGA-CGA-TGA-TGADesign primers
2974258TCTTTTGTTGTTTCATTTGCTGTTTCTTTAGCTGTTDesign primers

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