Microsatellites /Tandem Repeats database

Genome: Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9573TAATTTTTTTAAATTTTTTAAGTTTTTDesign primers
13625ATTTTTATTATTATTATTATTTTCDesign primers
26156ATATTTCTTTAATATTTTTTTTATTTTTCTCTADesign primers
27584TTTTTTTTTTATTTGTTTTTTTTADesign primers
41625TTTTTCTATTTCTTTTTTTTTGTCTTTTTGDesign primers
60557CTGCATCTTCATCTGTATCTGTATDesign primers
62692ATATAATTTTATAATTATAGAATTDesign primers
72012ATTTTTATTTATATTATTATTTTTDesign primers
121837AAAAAAAATCATATAAAATCAAAAATAAACDesign primers
173005TT-TT-TT-TT-AT-TT-TT-CT-TT-TT-AT-TT-TDesign primers
181906TTTTTTTTCATTATTATTTCATTTTTTTTTGGTDesign primers
200935TTTTTTTATTTTTTCTATTTTTTCTDesign primers
211459TTTTTTTATAATTTTTTCTATTTCTTTATGDesign primers
215328AAATATAATTAAATATTTTTTTATATAATTDesign primers
232760TTTTTTATTTCTTTTTTTATTATTTTTTTADesign primers
238142TTTATTATATTTTTTTTTAGTTTTTDesign primers
285497TT-TT-AT-TT-TT-TG-AT-TT-TT-CT-AT-TTDesign primers
287515AAATATTTTTTATTATTTTTATAAATTTTTDesign primers
295029AAACTAAAAAAGAAACAAAAGAAGAAAATAAAATAGDesign primers
309762AA-AA-AA-CA-AA-AA-GA-AA-AA-AA-TA-AA-ADesign primers
314202TTATTATATTAATATATTATTATADesign primers
337546AATAATAAAAATAATAATAATAAGDesign primers
353020ATTATGAATATGATTATGATTATGDesign primers
358132ATAAATTAAAATAACATAAAAAAAADesign primers
365639AA-AA-AA-AA-AA-AA-AA-TA-CA-AA-CA-AA-ADesign primers
367078GTATAGAATAAATA-TTATATAATAAATA-TTATATAATAAATA-TTATATAATAAATA-TTATATAATAAATADesign primers
383234AATAAATAAAAATTAAAAAAATTAATTAAADesign primers
384671ATAATAAATATTATTATAAATATTATTAGAAATATTDesign primers
390560TTATT-ATATT-ATATT-TTATT-TTATTDesign primers
411084CGCTCGACC-TGCTCGACC-TGCTCGACCDesign primers
418771CT-CT-AT-TT-TT-TC-TA-TA-TT-TT-TT-AT-GT-AT-TT-TT-TDesign primers
426666ATTTTTATAAAATTTAATAATTTTTTACAADesign primers
429430AGATGGTGGAAATGGTGGAGATGGTGGDesign primers
435824AAAAAAAAATAAAATTAAAAAATAADesign primers
442092AA-AA-GA-AA-AA-CA-AG-AA-AA-AA-TA-GA-AA-ADesign primers
446181ATCAAATT-ATCAAATT-ATCAAAATDesign primers
470075AA-AA-AA-AA-AT-TA-AA-AA-AA-AT-AT-AA-ADesign primers
483516AAATTTATTAAAATCAATTATAAATTATTADesign primers
494895ATAAAAAAAAATAAGATAATATAATDesign primers
495537AAAGAAAAAAAAATAAAAAAAAATADesign primers
502734AAAAAAATAAATAAAAAAACAACAADesign primers
512908GT-TT-TA-TT-TT-GT-TT-TA-AT-AT-AT-TT-TT-TT-TTDesign primers
519896AGAAAAATAAAAAAATAAAAAAATDesign primers
526643AAAAAACAAATAAAACAAAAAAAATDesign primers
526928AAAATTAAAAAATTTAAAAATAAADesign primers
543732AAAATATTAAAAAAATATGAAAAAATTAGTAAADesign primers
561349TTATTAATATATTAATTTATTAAADesign primers
567969TTTTTTAAAAAATTTTTAAATATTTTTTTTAAADesign primers
608754TTTAAATAATTATAAATATTTTGAGATAATDesign primers
610405ATTTTAAATATTTTAAAAATTTAAAATDesign primers
610627TATGAAAAAATATGAAAATCAATAAAAAAADesign primers
612831AA-TA-AA-AA-AA-CA-AA-AA-AA-TA-AA-AADesign primers
634117TTTTATTGTTTTATTATTTTTTTGDesign primers
640539TTTTTTGATATTTTCTTATATTTTTAGAAADesign primers

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