Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori F57

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
6691CTACTACCACTATTACCACTACTACCGDesign primers
7716CATGCCGCCCATGCCTCCCATACCGCCCATGCCACCDesign primers
12734AGGGAGTTTTTGAGAGTTTTAGGGATTTTCDesign primers
22991AAGCTAAAAGTTGGAAGCGTAAAAGTTGGAAGCGTAAAAGTTGGADesign primers
94790TGACACTCACACCGACACTAACACDesign primers
94892TAATACCGATACCGGTAACACAGACACCGGTAATACTGATACCGGDesign primers
95115GACATGGGAGATATGGGAGATATGGGADesign primers
149346TAAGTTTAAGATTAACTTTAAGCTDesign primers
154985ATGCAAAAAAAGGGAAAAAAAGGCAAAAGADesign primers
192126CCTCTTTAGGCTCCTCTTTAGTTTCTTCTTTAGCCTDesign primers
202552AAAAATAAAGAATCTTTTAATAAAAATAAAGAATCTTCCAATAAAGCTAAAGAGTCTTTTGATDesign primers
202688AAGCTAACCACACCCCACCAAACCACACCCCACCAAACCACACCCDesign primers
234244TTTTCTTTTGTATGCTCTTTTTTTGCATGCTTTTCTTCTGCATGCCTTTCTTCTATATGCDesign primers
238461TTGGGTTTTTTGCGTTTTTTGGGGTTTDesign primers
291377AGAAGAAGAAAAGGAAGATGAAGADesign primers
296549AAAAATTAGAAAAATTATTAAAATTAGDesign primers
317133ATTAAAGACAATAATATTAAACAAAATAACATTATTGAAAATAATDesign primers
346541CCCTAATATCCCCAATATCCCTAATATDesign primers
367652TGATGGAGG-CGATGGAGG-CGATGGAGGDesign primers
383033TTGAGTTTCTTTTTCTTG-TGGGATTTCTTTTTCTTG-TGGGATTTCTTTTTCTTG-TGGGATTTCTTTTTCTTGDesign primers
428995TTTTTTATTTTTGTTATTTTGTTTTDesign primers
435133TATCACATTACTTTTGTATCACATTACTTCTGTATCACACCACTTCTGDesign primers
449108GCTGAAGAAAATACGGCTCAAGAGAATATGACTGAAGAAAATACCDesign primers
483824TCCTTTTATCACATTTTATCACATTTTATCDesign primers
499225GAAGCGTTTGTGGAGGCGTTCGTGGAGGCGCTTGTGDesign primers
515144TCTTTA-TCTTTA-TTTTTA-TCTTTADesign primers
572114GCTTTTTTTAGCTTCTTCTAACTTTTTTTTDesign primers
572666GCTTTTTTTAGCTTCTTCTAACTTTTTTTTDesign primers
676446AACTCGTGGCAAAATACGATG-AACTCACAGGAAAATACGATG-AACTCACAGGAAAATACGATG-AACTCACAGGAAAATACGATGDesign primers
679288ATTTGCGCGATT-TTTTGCGCGATT-TTTTGCGCGTTTDesign primers
707976TCTTCTCAAATCATCATAATT-AACCCTCAAATCATCATAATT-AACCCTCAAATCATCATAATT-AACCCTCAAATCATCATAATTDesign primers
711969CTCAAAGAAATGAGGCTCCAAAAAATGAAGTTCAAAGAAATGAAGDesign primers
718516AAGAGTTAAAAAATAAAGAATTAAAGAATAAAGAACTGAAAAATADesign primers
732148TTTTGAAACATTTTTGAAAGTTTTTTGAAAATTDesign primers
785112AAGCATGACAAAAAACATGGCAAAAACCATGATAAADesign primers
798305CTCCAGCTACG-CTCCAGCTACG-CTCTAGCCACGDesign primers
825623AAAATTCTCAAAAATCTCAAAATTCTCDesign primers
832806AACAAAAACAACAAAAAAAACAATDesign primers
855131GCTTTTAATTCT-GTGTTTAATTCT-GTGTTTAATTCT-GTGTTTAATTCTDesign primers
910241GCTTTTAATTCTGTGTTTAATTCTGTGTTTAATTCTDesign primers
954803AGGGTTTAAAAAAAAGA-GGGTTTAAAAAAAAAGA-GGGTTTAAAAAAAAAGA-GGGTTTAAAAAAAAAGA-GGGTTTAAAAAAAAAGA-GGGTTTAAAAAAAAAGA-GGGTTTAAAAAAAAAGA-GGGTTTAAAAAAAAAGADesign primers
954957GTTTAAAAAGAAAGAG-TTCAAAAAAGAAAGAG-TTCAAAAAAGAAAGAG-TTCAAAAAAGAAAGAG-TTCAAAAAAGAAAGAGDesign primers
955066GGGTTTAAAAAAAAAGAGTTTAAAAAAAAGAGGGTTTAAAAAAAADesign primers
955146GGTTTAAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGADesign primers
993683TCTTTA-TCTTTA-TTTTTA-TCTTTADesign primers
1051374ATAAAAA-AGCAAGA-TTAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGADesign primers
1051501TAAAGAT-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAT-TAAAGAT-TAAAGAA-TAAAGAT-TAAAGAT-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAT-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAT-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAADesign primers
1056086AATAAAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAATDesign primers
1056448GCATCCAA-TCATCCAA-TCATCCAA-TCATCCAADesign primers
1130753TTTTCTAAATTTTCTAAGGTTTCTAAADesign primers
1161257TCTACTTTTTCAACTACTTTTTCATCTTTTTTTTCADesign primers
1167703CCAGAAAATACCACAAAATCCCCGCAAATADesign primers
1173615ATTTTCTTTTTTCTTTTTTCTACTTTCTDesign primers
1176074AATAAAACCAAATAAATCCAATTAAAACAADesign primers
1196748AAAGAAAATAAAAGGATAGAAATGADesign primers
1228271TTGCTTGTCTTTTGTTTTTCT-TGTTCTGTCTTTTGTTTTTCT-TGTTCTGTCTTTTGTTTTTCT-TGTTCTGTCTTTTGTTTTTCT-TGTTCTGTCTTTTGTTTTTCTDesign primers
1229643TGCTTTTTTAACCAAATCTTTCTGTTCTTTAACCAAATCTTTCTGTTCTTTAACCAAATCTTTDesign primers
1280199TAACCCATATAAACCATATAAGCCATADesign primers
1287929GGTTTAAAAAAAAAGA-GGGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGA-GAGTTTAAAAAAAAGADesign primers
1290564AAGCCAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGAT-TAAATAAGATDesign primers
1296139CTCTTGTTTAGTTTCTTGTTTATTTTCTTGTTTATTDesign primers
1348870GCTATTTTTAGGGATTTTTAGAGATTTTTADesign primers
1350060TA-CT-TA-TA-TT-TA-TG-TA-TT-TA-TG-TA-TT-TA-TG-TA-TT-TA-TG-TA-TT-TA-TG-TA-TT-TA-TG-TA-TT-TA-TG-TA-TT-TA-TG-TADesign primers
1355012CTCAAGAAA-CTCAAGAAA-CTAAAGAAADesign primers
1366758AACCCAAGAAAGAAGAGCCAAAAAAAGAAGAACCCAAAAAAGAGGDesign primers
1366857AGCCAAAACCCGAGCCTAAGCCCGAGCCTAAGCCCGDesign primers
1397560CAGAAGA-ATAAAGA-TTAAAGA-TTAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGA-ATAAAGADesign primers
1397645TAAAGAT-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAA-TAAAGAADesign primers
1402076AATAAAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAAT-TAAATAAAGCTTTAAATDesign primers
1402438GCATCCAA-TCATCCAA-TCATCCAA-TCATCCAADesign primers
1422331TGTTTTCATTATTTTCATTGTTTTCATDesign primers
1423593GCTGAACAACAAGCAGAGCAACAAGCAGAGCAACAAGCTCAACAACAGDesign primers
1477699GGCGTTTTT-AGCGTTTTT-AGCGTTTTTDesign primers
1477727GTGTTTTTA-GTGTTTTTA-GTATTTTTA-GTATTTTTA-GTATTTTTA-GTATTTTTADesign primers
1510234AAGCGTTTCAAAAGCGTCTTAACAGCGTTTTAADesign primers
1589551TATCGTTTTATCTTTTTATCATTTDesign primers

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