Microsatellites /Tandem Repeats database

Genome: Aeromonas salmonicida subsp. salmonicida A449

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
14632GGATGGCAAG-GGATGGCAAG-GGATGGCGGGDesign primers
166595CTGCCTGCTCAGCCTGCTCAGCCTGCTDesign primers
307574ATGGAT-CTGGAT-CTGGAT-CTGGATDesign primers
337393CCGCAGCCTG-CCGCAGCCTG-CCGCAGCAGGDesign primers
406288CCTGGCGGCGTGGCGGCCTGGCTGDesign primers
577945CCGGCGTT-ATGCCGTT-ATGCCGTT-ATGCCGTT-ATGCCGTT-ATGCCGTTDesign primers
645993TGATGG-TCATGG-TCATGG-TCATGGDesign primers
724547CTTGCCGTTGCCGTTGCCGTTGCCCTTGCTCTTGTCDesign primers
874623TCTATGTCTATCGCTGTCTATCGCTGTCTADesign primers
874881TGT-TGT-TTT-TGT-TTT-TGT-TTT-TGTDesign primers
881424ATGCCGATGCCAAAGCCGATCCCGDesign primers
945423TTGCCA-CTGCCA-CTGCCA-CTGCCADesign primers
1027674TTTGAT-GCTGAT-GCTGAT-GCTGAT-GCTGAT-GCTGATDesign primers
1115911AAGAAGCACAAAAAGCACAAGAAACACDesign primers
1216562ACCCTGA-CCCCTGA-CCCCTGA-CCCCTGADesign primers
1252449GCAGCACCAGCAGCATCAGCGGCADesign primers
1264350GAGCCTGCCTACGAG-GAGCCTGCCTACGAG-GAGCCTGTGTATGAGDesign primers
1291255CAGCGGGCCAGCTGGCCAGCTGGCDesign primers
1375954TGGTCATAC-TGCTGATCC-TGCTGATCC-TGCTGATCC-TGCTGATCC-TGCTGATCCDesign primers
1777031TGTCTACCTTGGTCTCAACCTTGGCTTCTACCTTGGDesign primers
1892741GTGTGGTAATCGGTGCGGCAATCGGTGTGGTCATGGDesign primers
2008651TGGCTGCGT-GACCTGCGT-GACCTGCGT-GACCTGCGT-GACCTGCGT-GACCTGCGTDesign primers
2020397TATGTGGA-TAACGGGA-TAACGGGA-TAACGGGA-TAACGGGA-TAACGGGADesign primers
2043453TATAATATTATATAAGACTATATAACACTADesign primers
2043743TGTTTATAGATATTAATAGATATTAATAGADesign primers
2145881GCCTTG-GCCTTG-TCCTTG-GGCTTGDesign primers
2200063GCGGAAGCGGTACCGGAAGCGGACDesign primers
2230101AGAAGGGATCAT-AGAAGGGATCAT-AGAAGGGGTCGTDesign primers
2424346CGATAAGC-TGAGAAGT-TGAGAAGT-TGAGAAGT-TGAGAAGT-TGAGAAGTDesign primers
2540302GAGCTGG-CAGCTGG-CAGCTGG-CAGCTGGDesign primers
2624006CCACCG-CCAGCG-CCAGCG-ACACCGDesign primers
2661702GCCAGCTCAGCAAGCTCAGCAAGCTCADesign primers
2671177TGCGCC-TGGGCC-TGGGCC-TGGGCCDesign primers
2685021CCAGCTCCTGCTCCTGCTCCAGATDesign primers
2747172ATATAAA-TTAAAAA-TTAAAAA-TTAAAAA-TTAAAAA-TTAAAAADesign primers
2817248AGGTAAAAACAGTGATAAAAACAGTGATAAAAACAGDesign primers
2957950CGCGTACCGACCAGCCGGGCAGCGCATCGAGCAGCCGGGCAGCGCATCGAGCAGCCGGGCDesign primers
3015926CCGCA-CCTCA-CCTCA-CCTCA-CCCCADesign primers
3038305GATTTACGT-TATTTACGT-TATTTACGT-TATTTACGTDesign primers
3043074ATATGATGAG-CCATGATGAG-CCATGATGAG-CCATGATGAG-CCATGATGAGDesign primers
3052620GCCTTG-GCCTTG-TCCTTG-GGCTTGDesign primers
3094953CGCCGGAGC-TGCCGGAGC-TGCCGGAGC-TGCCGGAGC-TGCCGGAGCDesign primers
3139411CGGCAACAC-AGGCAACAC-AGGCAACAC-AGGCAACACDesign primers
3179523TGGCAC-TGGTAC-TGGTAC-TGGTACDesign primers
3275832TCGAGCTCGAACTCGCGCTCCAGCDesign primers
3310278CCGAGCTGGCGGAGCTGGCGGAGCTGGDesign primers
3310588CTGGTGATGGTGCTGGCGCTGGTGDesign primers
3499634TCAGTTATA-GCAGTTATA-GCAGTTATADesign primers
3567534TGGTCATGATCGTGATCGTGATCGTGGTCATGGTCGTGACCATGATCGDesign primers
3612579GCCATGCAGCCAAGCAGCCAAGCADesign primers
3637819CATCACCACCGTCACCACCGTCACCACDesign primers
3686935AGCCAGCT-CGCCAGCT-CGCCAGCTDesign primers
3717151GCCCATGCCACCCATGCCGCCCATGTCDesign primers
3751982TCGTCTTCATCTTCGTCTTCGTCTTCGTCGDesign primers
3768667GTTGTTGGC-TTTGTTGGC-TTTGTTGGCDesign primers
3788405CCCAGCTTG-ACCAGCTTG-ACCAGCTTGDesign primers
3834454CCCTGC-CCCTGC-GCCTGC-GCCTGCDesign primers
4142873ATATTTTTTTATTTTTTTATCAATTTTTTTDesign primers
4145999TGCGTTGTAAAGG-TGCGTTGTAAAGG-TGCTTTGTAGAGGDesign primers
4298055GCCAGCAT-GACAGCAT-GACAGCAT-GACAGCAT-GACAGCATDesign primers
4364348GTGAATTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGA-GGCAGTTGADesign primers
4423143TATGGAAGGGATAAAGAAGGGATAAAGAAGGGADesign primers
4454587TAGATGCTGCACTCTATGCTGCACTCTATGCTGCACDesign primers
4630813GCCTTG-GCCTTG-TCCTTG-GGCTTGDesign primers
4646192TTGGTGTTCAACTTTATTACTTAGTTTCCAACTATATTACTTGGCATCCAACTTTATTACDesign primers
4653926GCAGACGGGCAAACGGGCCGACGGDesign primers

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