Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus subsp. aureus str. Newman

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
73717	CGTTACCATCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGGCTTGTTGCCGTCTTCTTTACCAGGTT	Design primers
73821	TCTTCTTTACCAGGTTTTTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTGCCAGGCTTGTTGTTGTCTTCTTTACCAGGCTTGTTGTTGTCTTCTTTGCCAGGCTTGTTATTGTCTTCTTTGCCAGGCTTGTTATTG	Design primers
116035	AAAAATAAAAAAAGAAAGAAAAAAG	Design primers
254235	TTAGTATTATTATTTGTATTATTA	Design primers
275771	AAAAAAACTAAAAATACTTAAAAAACT	Design primers
288045	AAAGAAATGAAAAAAGAAGATAAGA	Design primers
330708	CATTTTCGGAAAACGGATTATCGGCAAACGGGTTTTCGGAAAACG	Design primers
330778	TACTACTAATAATAATAGTACTAATAATGATTTAACTAATAATAACAATACTAATAATGA	Design primers
337735	AAATGACAAAAATGACAGAAATGACGAAAATGACAC	Design primers
443226	AAAGATAAAGAGAAATATAAAGAA	Design primers
445346	GA-TA-AA-AA-TA-AA-TA-TA-AA-GA-AA-AA	Design primers
449313	GG-AA-AA-TA-GC-AA-AA-TA-GA-AA-AA-TA	Design primers
451388	GAAGAAGATGAAGAAGTAGAAGAA	Design primers
603839	GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGC	Design primers
603912	ACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCAATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCG	Design primers
604094	AGCGACTCAGATTCTGAC-AGCGATTCAGACTCAGAC-AGCGACTCAGACTCAGAC-AGTGATTCAGATTCAGAC-AGCGACTCAGATTCAGAT-AGCGACTCAGACTCAGAT-AGCGACTCAGACTCAGAT-AGCGACTCAGACTCGGAT-AGCGATTCAGATTCAGAC-AGCGACTCAGATTCAGAT	Design primers
608245	ATCAGATAGCGACTCAGATTCGGACAGCGACTCAGATTCAGACAGAGACTCAGACTCAGATAGTGATTCAGACTCGGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGAGACTCAGA	Design primers
608393	GATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGACAGC	Design primers
612064	TGACTCAGACAGCGACTC-AGACTCAGACAGCGACTC-AGACTCAGACAGTGATTC-AGATTCAGACAGCGACTC-AGATTCAGATAGCGACTC	Design primers
612161	GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGACTCA	Design primers
612450	ATAGCGACTCAGATTCGGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAG	Design primers
664597	AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AA	Design primers
705934	AAAATTAATATTAAAAATAAAAAT	Design primers
729056	ATAAAGACAAAGATAAAGATAAAG	Design primers
783747	AAATTTTTTTAAATTTGTTCAAGTTTTTCT	Design primers
851519	TAGTGGTTCAGATTCAGCGAGTGATTCAGATTCAGCAAGTGATTCAGACTCAGCGAGTGATTCAGATTCAGC	Design primers
851712	TCAGACAGTGACTCAGATTCAGATAGCGATTCAGATTCAGATAGCGATTCAGAT	Design primers
851767	CCGACAGTGATTCCGACTCAGACAGCGATTCTGACTCCGACAGTGATTCCGACT	Design primers
851850	TCCGACTCAGATAGCGAT-TCCGACTCAGATAGCGAC-TCAGATTCAGACAGCGAT-TCAGATTCAGACAGCGAT-TCAGATTCAGATAGCGAT	Design primers
851949	GACAGTGACTCAGATTCCGACAGTGACTCGGATTCAGATAGCGATTCAGATTCCGACAGTGACTCAGATTCCGACAGTGACTCAGACTCAGACAGTGATTCGGATTCA	Design primers
852099	GACTCGGATTCAGATAGCGACTCAGACTCGGATAGCGACTCGGATTCAGATAGCGATTCGGACTCAGATAGC	Design primers
852172	ATTCAGAATCAGACAGCG-ATTCAGAATCAGACAGCG-ATTCAGATTCAGACAGCG	Design primers
852234	AGTGACTCAGATTCAGATAGTGACTCGGATTCAGCGAGTGATTCAGACTCAGGT	Design primers
871992	AAAAGTATAAAAGTTTAAAAGAAT	Design primers
1016240	TCAGGGTTGTTAGGGTTGTCAGGGTTA	Design primers
1022835	TAGGTGTTGGTGTAGGCGTAGGTT	Design primers
1108923	CATTTTCGGAAAACGGATTATCGGCAAACGGGTTTTCGGAAAACG	Design primers
1108993	TACTACTAATAATAATAGTACTAATAATGATTTAACTAATAATAACAATACTAATAATGA	Design primers
1143707	CTTTAACTT-CTTTAACTT-CTTTAGCTT	Design primers
1202828	AAGTTTTTCAAAGTTATTAAAAGTGTTTAA	Design primers
1270385	TATAGAATTATATAATTATAGAAA	Design primers
1384073	CTGCTTCTTCTTCGGCTTCTTCTT	Design primers
1431319	ATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTG	Design primers
1564023	TT-TT-GT-TT-CT-GT-AT-TT-GT-TT-CT-GT-AT-TT-GT	Design primers
1745753	TTCTTTTTTTATCTTTTCTATTCTT	Design primers
1877705	TTTTTTCTTTCTTTTTTTATTTTTC	Design primers
1920755	ATTATATTATAATATTATTATTTT	Design primers
2013075	ATTATTAGTATTGTTATTATTAGT	Design primers
2013156	TCCGTTTTCCGAAAACCCGTTTGCCGATAATCCGTTTTCCGAAAA	Design primers
2026747	ACAATTTAATAAACTTTAATAGAATTTTAT	Design primers
2083039	ATATATACAATATACACAATATACACA	Design primers
2088330	AAATTTTAGGGACTTTTTAGGGACTTTTTAGGG	Design primers
2119429	TGTTGATTTGT-TGTTGATTTGT-TGTCCATTTGT-TGTCCATTTGT-TGTTGATTTGT-TGTTGATTTGT	Design primers
2148037	TTTGGATTCGGATTTGGCTTTGGT	Design primers
2148064	TCTGGATCTGGTTTTGGATCCGGA	Design primers
2148142	TCTGGATCTGGTTTTGGATCCGGA	Design primers
2319049	CATGTATCTTGATGCATCTTCAGGTATTTT	Design primers
2419959	ACAATAACTATAACAATTACAACA	Design primers
2438002	TAATATATCAATATATTGATATAT	Design primers
2494909	TTATTATTCGCTTGGTTATTACTTGATTGGTTATTATTTGTTTGG	Design primers
2509024	TTTAAATTAATTTTATGTAATATAA	Design primers
2714778	TATTTTAAATTTTATATTTTTTATTTTT	Design primers
2780674	TGAATCGGAGTCACTATCTGAGTCTGAGTCGCTATCTGAATCCGAGTCGCTATC	Design primers
2780729	GAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCTGAGTCTGAGTCGCTATCCGAGTCTGAGTCGCTGTCT	Design primers
2780802	AATCTGAATCACTGTCTGAATCCGAATCGCTATCTGAATCTGAATCGCTATCCGAGTCTGAGTCGCTGTCTGAATCTGAATCGCTGTCTG	Design primers
2780897	GAATCGCTATCTGAATCT-GAGTCGCTGTCTGAGTCT-GAATCGCTATCTGAATCT-GAGTCGCTATCTGAGTCT-GAGTCGCTGTCTGAGTCT-GAGTCGCTGTCTGAGTCT-GAATCGCTATCTGAATCT-GAGTCGCTGTCTGAGTCT-GAGTCGCTATCTGAGTCT-GAGTCGCTGTCTGAATCT-GAGTCGCTGTCTGAATCT-GAATCGCTATCTGAGTCT-GAATCGCTATCTGAGTCT	Design primers
2781134	TCACTGTCTGAGTCCGAGTCACTGTCTGAATCTGACTCACTATCTGATTCTGAG	Design primers
2781200	TCTGAGTCGCTGTCTGAATCTGAATCACTGTCTGAATCCGAATCGCTATCTGAATCTGAATCGCTATCTGAATCTGAATCGCTATCTGAATCTGAGTCGCTATCTGATTCTGAATCGCTATCTGATTCTGAGTCGCTGTCTGAATCTGAATCACTGTCTGAA	Design primers
2781368	TCGCTATCTGATTCTGAGTCGCTATCTGAACCTGAGTCGCTGTCTGAGCCTGAG	Design primers
2806008	TGGATCTTCCGATGTATCTTTCGATGCATCTTTCGA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

73717

CGTTACCATCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGGCTTGTTGCCGTCTTCTTTACCAGGTT