Microsatellites /Tandem Repeats database

Genome: Marinitoga piezophila KA3

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
41103GGATTTCAACAAGGAATTCAAGAAGGAATTCAAGAAGGAATTCAACAGGGAATTCAACAGDesign primers
55875AAGAA-AAGAA-AAGAA-AATAA-TAGAADesign primers
66036TGAAAAAATGAAAATAGGAAAAAADesign primers
68000ATAAT-AAAAT-AAGAA-AATAA-AAAADesign primers
79912TTTAATTTATTATAATTAAAATTAADesign primers
110252AAAAAAAAAATAAATAAAAGAAAADesign primers
129124AGAAATATTGGAGAAAAACTGGGGAAATATTAGDesign primers
157700AAAAATAGAAACATAGAAAAATATDesign primers
166263AAAAAATGAGAAAATGAAAAAATTDesign primers
207452AAATGTTTTTATCTGTTTTTAAATCTTTTADesign primers
210443TCTTTTCCTTTGTTTTCTTTTGTTTDesign primers
213547TT-CT-TT-TT-AT-TT-TT-CT-AT-TT-TT-TTDesign primers
221792ATACTGTATAGTATAATTATATATAGTATAATACTGATTAGTATADesign primers
254585GGCGGTGATGGTGGTGATGGCGGTAATDesign primers
290884AA-AT-AA-AA-AA-AT-AG-AA-AA-AT-AA-AADesign primers
314541TAACAGCATCGCAACAGCAACGCAACAGCAACGDesign primers
314644TAAAGATAATAAAGATATAAAAGATAATAAAGATACDesign primers
320290AAATTAAAATTTATATTAAAATAADesign primers
349053ATAATGGATATAATAGATATAATGGGTDesign primers
419330AAAATAAAAACAAATAATATAAAAADesign primers
455251TATGTAATCCTTGCTGTAATCCTTGTTGTAATCCTTDesign primers
490430TTTGTATTTTTGTAATTTTATATTDesign primers
513467TTTTTATTATTTTATTTTTTAATTDesign primers
552682AAATGTAAATATTAATGTAAATGADesign primers
556775TCTTTAATTCTTTAAGTCTTAAATDesign primers
569380TAAAAATTAAAATAAAAATAAAAADesign primers
602126TTTTTTGTTTTTCTTTTTCTTCTTTDesign primers
630084ATTTTTAAATTATTAAATTTTTGADesign primers
686275TTAAGCATAC-TCACGCATAC-TCACGCATAC-TCAATCATAC-TTACGCATACDesign primers
692935TCCTCAAAATCATCAAAATCATCAAAADesign primers
704617TTTCAT-TGTCAT-TGTCAT-TATCATDesign primers
774033AATTATTTATTATTATTTATTTATTATTATTTATTDesign primers
835626TTTTTTATTTTTATTTATTTTTTCTDesign primers
836166GATAATGATGATGAAAATGATTATDesign primers
857364TTTTTTATTTTTTTCTCTTTTTTCTDesign primers
871281TAATACTCTTATTACTCTTAATACTTTDesign primers
892347TATATTATTTTCTATAATATTATTTDesign primers
904021AA-AT-AA-AA-AA-AT-AG-AA-AA-AT-AA-AADesign primers
930988TTTTTATTTTTTTGTTATTTTTTTADesign primers
974436AATCCCTGTTCTATTCCCTGTTCTATTCCCTGCTCTDesign primers
993853ATAGAAAGAGAAATCGAAATGGAADesign primers
1015938ATATCTTTTATATCTTCTATTTCTTTTDesign primers
1190471TTTCTAATGTTCTAATTTTTTAATTTTCTAATTCTCTAATDesign primers
1199518ATATAATTTAATATATTATAATATADesign primers
1204957TATCTTTATCCTTATCTATATTTTDesign primers
1227929ATATTTTTTTATGTTTTCTTTTATTTTTTCATAGTTTTCTDesign primers
1257306ATTATTACTATTATTATTACTATTATTATCDesign primers
1309053GCTGCAATCCTTGTTGTAATCCTTGTTGTAATCCTTGCTGTAATCCCTDesign primers
1362281CAGGAAGAGGAATAGGAAAAGGAADesign primers
1374366AAAAAAAGAAATAAAAAAATTAAAADesign primers
1389427AAGAAT-AAGAAT-AAAAAT-AAGAAGDesign primers
1392503AAAGGATTAAAGGTTTAAAGGATADesign primers
1429551ATAAAAATAAAGAAAAAAATGAAADesign primers
1431772ATAAGACTAAGAATAAAAATAAAADesign primers
1458212AA-AA-AA-TA-AA-AT-AA-AA-TA-AA-AA-CA-ADesign primers
1575932TAT-TGT-TGT-TGT-TGT-TGT-TGT-TGTDesign primers
1579363TATTGAAAAATATTTAAAATTTTTGGAAAADesign primers
1581329GT-AA-AA-GA-AA-AA-AT-AA-AA-GA-AA-AADesign primers
1591047AAAAAATAAAAAATATAAAAAATAADesign primers
1610153ATAGAGTATGCTTGAGTATGAGTGAGTATGTTTGAGTATGDesign primers
1611657GAAAAAATGAAATAATGAAACAATDesign primers
1620267ATATAATAAAATATAATAAGAAATAAGAAADesign primers
1625730TTTTGTTTTTTTATTTTTTTGTTGDesign primers
1631469AAAAAAAGAAAAATAAAGCATAAAAAAGAADesign primers
1682192ATA-TTG-TTG-TTG-TTG-TTG-TTG-TTG-TTG-TTG-TTG-TTGDesign primers
1725356TGAATTTGAACTTGATTTTAAATTDesign primers
1741600ATCAGTATGC-AGGAGTATGC-GTGAGTATGC-GTAAGTATGC-GTGAGTATGCDesign primers
1760537TATAAAATAATATAAAATAATAAAADesign primers
1768532AACAGAAGAAGAAACAGACGAAGCTACAGAAGAATADesign primers
1790020AATAGA-AATAGA-AAGAGA-TATAGA-AAGAGADesign primers
1849357AGAAGAAGCAGAAGGAGAAGAAGCDesign primers
1860910ATATAATAAAATATAATAAGAAATAAGAAADesign primers
1863649AT-AT-TT-AT-TT-AT-TT-AT-TT-AT-TT-ATDesign primers
1875507TCTTCTTTACCTTCTTTTCTACCTTCTTTTCTACCTDesign primers
1931604TAGAAAAATAGTGAAAAATATTGTAAAATADesign primers
1936953ATTAAAGTAAATAAAAATAATTTAADesign primers
1937175ACCAGCAACAGCACCTGCTCCAGCDesign primers
1949046AA-AA-GG-AA-GA-AA-AA-AA-GG-AA-GG-AA-AA-AA-GA-AA-AA-AADesign primers
1952258CAC-CAC-CAC-CGC-CAC-CTC-CAC-CACDesign primers
1979035ACGCATACTC-GTGCATACTC-ATGCATACTC-ATGCATACTTDesign primers
1991763TCAGCAGGCACAACAACAGGCACAACAGCAGGCTCADesign primers
1994036CCAATGCAACAACAAATGCCAATGCAGCAACAAATGCCGATGCAGCAACCAATGDesign primers
2013447TTTAAAT-TTTAGAT-TTTAGAT-TTTAAATDesign primers
2067467TGTTTTATTGTTATTTATTGTGTTTAATAGDesign primers
2072595TT-CT-TT-TT-AT-TT-TT-CT-AT-TT-TT-TTDesign primers
2072831ATCCGCCGGTT-TTCCGCCGGTT-TTCCGTCGGTTDesign primers
2078505AATCCGTCGGTTTTCCGCCGGTTTTCCGTCGGTTTTCTGTCGGTTTTCCGTCGGTTTTTCGCTGGTDesign primers
2118611AATAAAAACAAAAAGAAAAATAAGDesign primers
2130005TTCCTTTTTCTTTTGCTTTTTCTTDesign primers
2130122ATTCTTTTTTATTATTTTTAATTCTTTCCTDesign primers
2136134CTATTGCTAATGGTATTGCTCTTGDesign primers
2155506TT-TT-TT-TG-TT-TT-CT-TT-TT-TT-CT-TT-TDesign primers
2155713ATTTTATA-ATTTTATA-AATTTATADesign primers
2193900TGTCGAAGGTTGTCGAAAATTGTCGACGTTDesign primers
2204770ATATTATTATAAATGATTATTTTTTATTATDesign primers
2222481AACAAAAAAATGAAAAAAAAAAAGAATAAAAAAATTDesign primers

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