This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 60245 | AGCATCATTGACCATGCTCCA-GATATCATTGACCATGCCCCA-GACATCATTGACCATACCCCA-GACATCATTGACCATACCCCA-GACATCATTGACCATGCCCCA-GACATCATTGACCATGCTCCA-GACATCATTGACCATACCCCA-GACATCATTGACCATACCCCA | Design primers |
| 60414 | ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATACCTCAG-ACATCATTGACCATGCCTCAG-ACATCATTGACCATGCTCCAG-ACATCATTGACCATGCCCAAA | Design primers |
| 159433 | AAAGTCAAAGGCAAAGTCAAAATC | Design primers |
| 255231 | CTAGCTTTTTGTTAGCTCGAC-CTAGCTTTCTACTTGCTCGAC-CTAGCTTTCTACTTGCTCGAC-CTAACTTTTTACTTGCTCGAC-CTAGCTTTTTACTTGCTCGAC-CTAGCTTTCTACTTGCTCGAC-CTAGCTTTCTACTTGCTCGAC-CTAGCTTTTTGCTTGCTCGAC-CTAACTTTTTACTTGCTCGAC | Design primers |
| 255421 | TCCCTTTTTACTTGCTCGAGCTAGCTTTTTGCTTGCTCGACCTAACTTTTTACTTGCTCGAGC | Design primers |
| 320904 | TCATCGTAATCGTCATCATCTTCG | Design primers |
| 327663 | TACACAAAATCCTGAACAGTCCCCAAAATCCTGAACAGTCCCCAAAATTCTGAACAG | Design primers |
| 362170 | GGCATAACTAGTTTACCGCCAAACCTAACTAGTTTACCTCCAGACCTAACTAGTTTACTTCCAGACATAACTAGTTTACCGCCTGACCTAACTAGTTTACTTCCAGACATAACTAGTTTACTTCCAGACCTAACTAGTTTACCTCCTGACCTAACTAGTTTACCTCCAGACATAACTAGTTTACCTCCA | Design primers |
| 362360 | ACCTAACTAGTTTACTTCCAGACCTAACTAGTTTACCGCCAGACCTAACTAGTTTACCTCCTGACCTAACTAGTTTACCGCCAGACCTAACTAGTTTACCTCCTGACCTAACTAGTTTACTTCCAG | Design primers |
| 426690 | GCCACC-GCCACC-GCCGCC-GCCGCC | Design primers |
| 426753 | GCC-ACC-GCC-GCC-GCC-GCC-GCC-ACC-GCC-GCC-ACC-ACC | Design primers |
| 426985 | CCGCCAGCGCCACCACCACCGGCA | Design primers |
| 604541 | CTCTACCCATCCCGAGGACTTACCCTAATCATCCCGAGGACTTACCCTAATCATCTCGAGGACTTA | Design primers |
| 604608 | CCTAATCATCTTGAGGACTTAC-CCTAATCATCTTGAGGACTTAC-CCTAATCATCTTGAGGACTTAC-CCTAATCATCTTGAGGACTTAC-CCTAATCATCTCGAGGGGTTGC | Design primers |
| 709814 | AGAGCAAAACAAAGCCAAACAGACCAAAAG | Design primers |
| 718997 | ATG-ATG-GTG-ATG-ATG-GTG-ATG-ATG | Design primers |
| 767722 | GGTTACGGTAACGGCTACGGCTAC | Design primers |
| 810424 | GATGATGCAGCAAATGATGCAACAGATGATGAATCA | Design primers |
| 838915 | GCGGTGGCGGACGTGGCGGTTACGACCGTGGCGGACGTGGTGGTTACGACCGTGGTGGTCGTGGCGGTTACG | Design primers |
| 967226 | TGCTCTAGCTCGACCTAGTTCTGCTCTAGCTCAACCTAGCTT-TTTACTAGCTCGACCTAGCTCTGCTTTAGCTCAACCTAGCTT-TTTGTTAGCTCGACCTAGTTCTGCTCTAGCTCAACCTAGCTT-TTTACTAGCTCGACCTAGTTCTGCTCTAGCTCAACCTAGCTT-TTTACTAGCTCGACCTAGCTCTGCTCTAGCTCAACCTAGCTT-TTTACTAGCTCGACCTAGCTCTGCTCTAGCTCAACCTAGCTT-TTTACTAGCTCGACCTAGCTCTGCTCTAGCTCAACCTAGCTT | Design primers |
| 993802 | TCCGCCGTC-TCCGCCGTC-TCCGCCGCC | Design primers |
| 994497 | TGACACCAT-TGCCACCAT-TGCCACCAT-TGACACCAT | Design primers |
| 994534 | AGCGCCATC-AGCGCCATC-AGCGCCATC | Design primers |
| 997429 | CTAGGTCGAGCTAGCCAAACCCTAGGTTGAGCTAGTGACACCTTAGGTCGAGCTAGCCAAGTA | Design primers |
| 1041215 | TAAAGAAGCCCTAAAGAGGACCTAAACAAGTCC | Design primers |
| 1117719 | TTTAATTTAAA-CGGGATTTAAA-CGGGATTTAAA-CGGGATTTAAA-CGGGATTTAAA-CGGGATTTAAA-CGGGATTTAAA-CGGGATTTAAA | Design primers |
| 1209667 | TACCGAACTAGTTCAGCTCCAGACCGAAGCAGTTCACCTCCAGACCGAACTAGTTTACCTCCA | Design primers |
| 1209731 | ACCGAAGCAGTTTACCTCCAGACCGAACTAGTTTACCTCCAGACCAAACTAGTTTACCTCCAG | Design primers |
| 1209795 | CCAAACTAGTTCAGCTCCAGACCAAACTAGTTCACCTCCAGACCGAACTAGTTCAGCTCCAGACCGAACTGGTTCACCTCCAGA | Design primers |
| 1209880 | CGAAGCAGTTCACCGCCAGACCGAACTAGTTCACCGCCAGACCGAAGCAGTTTACCTCCAGACCGAACTGGTTCACCTCCAGACCGAAGCAGTTCACCTCCAGACCGAACTAGTTCACCTCCAGAC | Design primers |
| 1210007 | AAACTAGTTCAGCTCCAGACC-AAACTAGTTCACCTCCAGACC-AAACTAGTTCACCTCCAGACC-AAACTAGTTCACCTCCAGACC-AAACTAGTTCACCTCCAGACC | Design primers |
| 1242795 | CGGCCCTGCGGCCCTACGGGCCTG | Design primers |
| 1383236 | CAGTTTACTTCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTCACTTCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTCACTTCCAGACCGAACTAGTTCACTTCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTCACCGCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTTACCTCCAGACCGAACTAGTTTACTTCCAGACCTAACTAGTTCACTTCCAGACATAACTAGTTCACTTCCAGACATAAC | Design primers |
| 1389414 | ACCATC-ACCATC-AGCATC-ACAATC | Design primers |
| 1428498 | CCCGAAGGCCCAAAGGGCCGAAGG | Design primers |
| 1434149 | CCCTTCGGCCCTTTGGGCCTTCGG | Design primers |
| 1459222 | TCGCCATAGCCACCGCCATCGCCG | Design primers |
| 1478896 | CTCCCAAACCGAACTAGTTCA-CCTCCAGACCGAACTAGTTTA-CCTCCAGACCGAACTAGTTCA-TCTCCAGACCGAACTAGTTCA-TCTCCAGACCGAACTAGTTCA-CCTCCAGACCGAACTAGTTCA-CCTCCAGACCGAACTAGTTTA-CCTCCAGACCGAACTAGTTTA | Design primers |
| 1487665 | CCCTTCGGCCCTTTGGGCCTTCGG | Design primers |
| 1492871 | GAGGACCTATAGAGGTCCTACAGAGGACCTAGG | Design primers |
| 1619967 | CCTTTTGCTTTTCCTGTTCATTTT | Design primers |
| 1713913 | AAAATATTTTTTAATATTTTTTTTGAATTATTTTTT | Design primers |
| 1779439 | GGGGAAGGAGAAGGGGAAGGGGCA | Design primers |
| 1812640 | TGAGTT-CGAGTT-TGAGTT-TGAGTT | Design primers |
| 1879872 | TAAACTAGTTGTGTCTGGAGCTAAACCAGTTAGGTCTGGAGGTAAACCAGTTAGGTCTAGAGCTAAACTAGTTAGGTCTGGAGCTAAACCAGTTAGGTCTGGAGGTAAACCAGTTAGGTCTAGAGCTAAACTAGTTAGGTCTGGAGCTAAACCAGTTAGGTCTGGAGG | Design primers |
| 1880061 | TAAACCAGTTGTGTCTGGAGCTAAACTAGTTAGGTCTGGAGGTAAACCAGTTAGGTCCAGAGC | Design primers |
| 1943071 | CAAAACCCGCCAAACGCCGCCAAAACGCCC | Design primers |
| 1944532 | CGCTAGACCGAACTGGTTCACCTCCAGACCGAACTAGTTCACCTCCAGACCAAACTAGTTCACCTCCAGACCGAACTGGTTCACCTCCAGACCAAACTAGTTCAC | Design primers |
| 1944638 | TCCAGACCAAACTAGTTCATC-TCCAGACCAAACTGGTTCACC-TCCAGACCAAACTGGTTCACC-TCCAGACCAAACTGGTTCACC | Design primers |
| 1949195 | GTCTTTTACCAA-CCCTTTTACCAA-CCCTTTTACCAA | Design primers |
| 1967814 | AAAATATTTTTAATATTTTTTTGAATTATTTTT | Design primers |
| 2146448 | CCAAAAAGGCCACAAAGGGCAAAAAGG | Design primers |
| 2249212 | CGCAAACGAAAACGCAAACGAAAACCCAAA | Design primers |
| 2259547 | CGGTGG-CGGTGG-CGGCGG-CGGTGG-CGGCGG | Design primers |
| 2259804 | GTGGTGGTGATGGTGGCGCTGGTG | Design primers |
| 2311833 | TTTCCTGTTCCTCTTCCTTTTCGT | Design primers |
| 2335405 | CCCGAAGGCCCAAAGGGCCGAAGG | Design primers |
| 2343686 | GCTGCTGCCGCTGTTGCTGTTGCT | Design primers |
| 2386010 | TT-CT-TT-TG-CT-TT-TT-CT-TT-TT-GT-TT | Design primers |
| 2398386 | TTTTCTTTTTTTTCTTCTTTTTTT | Design primers |
| 2517803 | GTATAGGAAGGTACCTCATGGGGTTTAGGGACGTACCTCATGGGGTTCAGGGACGTACCTCATGGG | Design primers |
| 2536004 | TTACCGAACTAGTTCACCTCC-GCACCGAACTGGTTTACCTCC-AGACCGAACTGGTTTACCTCC-GCACCGAACTGGTTTACCTCC-GCACCGAACTAGTTTACCTCC-GCACCGAACTGGTTTACCTCC-AGACCGAACTAGTTTACCTCC-GCACCGAACTAGTTTACCTCC | Design primers |
| 2630061 | GAGCTAACTTTTTGCTAGCTCGAGCTAGGTTTTTATTAGCTCGACCTAACTTTCGGCTAGCTC | Design primers |
| 2630131 | GTTTTCATTAGCTCGACCTAGGTTTTTGTTAGCTCGACCTAACTTTCGACTAGCTCGACCTAGGTTTTCATTAGCTCGACCTAACTTTCGACTAGCTCGACCTAGGTTTTCATTAGCTCGACCTAA | Design primers |
| 2677227 | CTAGGTCCTCTTTAGGACCTCTATAGGTCCTCC | Design primers |
| 2677512 | AGGACCCCTCCTGATGGGTATG-GGAACCCCTCTCGATGGGTATG-GGAACCCCTCTTGATGGGTATG-GGAACCCCTCCTGATGGGTATG-GGAACTCCTCCTGATGGGTATG-GGAACTCCTCCTGATGGGTATG-GGAACTCCTCCTGATGGGTATG-GGAATCCCTCCTGATGGGTATG | Design primers |
| 2705487 | CTACAACCTATATTATGCAGTTCTATAACCTATATGATATAGTTCCACAACCTATATCATGCACTT | Design primers |
| 2827573 | AGTCGTCATCATCATCGTCATCGTCATCATCGTCATCATCATCATCATCATCATCATCATCGTCATCATCATCAT | Design primers |
| 2827650 | TCATCGTCGTCGTCATCATCATCC | Design primers |
| 2851356 | CGATAAGCTGCGAAAAGCTACGACGAGCTG | Design primers |
| 2928571 | TTACCGAACTAGTTCACCTCC-AGACCGAACTAGTTCACCTCC-AGACCGAAGCAGTTCACCTCC-AGACCGAACTAGTTCACCTCC-AGACCGAACTAGTTCACCTCC-AGACCGAACTAGTTCACCTCC-AGACCGAACTAGTTCACCTCC-AGACCGAACTAGTTTACCTCC-AGACCGAAGCAGTTCACCTCC-AGACCGAAGCAGTTCACCTCC-AGACCGAACTAGTTCACCTCC-AGACCGAACTAGTTCACCTCC-AGACCGAAGCAGTTCACCTCC | Design primers |
| 3030091 | GGCTCTTTTTTTGATCTTTTTTGACTCTTTTTT | Design primers |
| 3042553 | CGC-CAC-CAC-CTC-CGC-CTC-CGC-CAC-CAC-CGC-CAC-CAC-CAC-CGC-CAC | Design primers |
| 3093646 | AA-AA-CA-AA-AG-AA-AG-CA-AA-AC-AA-AA-A | Design primers |
| 3247128 | GCAAAAGTTATGTCTGGAAGT-AAACTAGTTATGTCTGGAAGT-AAACTAGTTATGTCTGGAAGT-AAACTAGTTATGTCTGGAAGT-AAACTAGTTATGTCTGGAAGT | Design primers |
| 3247234 | AACTAGTTATGTCTGGAGGTA-AACTAGTTATGTCTGGAAGTA-AACTAGTTATGTCTGGAAGTA-AACTAGTTGTGTCTGGAAGTA-AACTAGTTATGTCTGGAAGTA-AACTAGTTAGGTCTGGCGGTA-AACTAGTTAGGTCTGGCGGTA-AACTAGTTAGGTCTGGCGGTG-AACTAGTTCGGTCTGGAGGTA | Design primers |
| 3285580 | GAGCTAGCTTTTTGTTAGCTCAAGCTAGGATTTTGCTAGCTCGACCTAGCTTTTTGTTAGCTC | Design primers |
| 3388039 | TAGATGCCGATGTAGACGTCGATGTAGATGTAGATGTAGACGTCGATG | Design primers |
| 3388092 | ATTGATGTAGATGCGGATGTAGATGCCGATGTAGATGCTGATGTAGATGCTGATGTAGATGCTGATGCAGAT | Design primers |
| 3432483 | CCCTTCGGCCCTTTGGGCCTTCGG | Design primers |
| 3465374 | AGCCCAAAAAAGGCCCAAAAGAAGGCCAAAAAA | Design primers |
| 3511799 | GGAGGCGAAAGAGGAGCCTAAAGAGGAGGTAAAAGA | Design primers |
| 3529235 | CCCTGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTAGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTAGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGGGGGTGAACCAGTTCGGTCTGGAGGTGAACCAGTTCGGTCTGG | Design primers |
| 3540793 | GACGATGATGATGACGATGACGAC | Design primers |
| 3540831 | GGA-TGA-CGA-GGA-TGA-TGA-CGA-TGA-CGA | Design primers |
| 3551223 | GCAAAAGTTCGGTTTGGAGGT-GAACTAGTTCGGTCTGGAGGT-GAACTAGTTCGGTCTGGAGGT-GAACTAGTTCGGTCTGGAGGT-GAACTAGTTCGGTCTGGAGGT | Design primers |
| 3551329 | AACTGGTTCGGTCTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTGGTTCGGTCTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTGGTTCGGTTTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTGGTTCGGTTTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTGCTTCGGTCTGGAGGTGAACTAGTTCGGTCTGGAGGTGAACTGCTTCGGTCTGGAGGTGAACTGCTTCGGTCTGGAGGTA | Design primers |
| 3642923 | TATCTC-TGTCTC-TGTCTC-TGTCTC | Design primers |
| 3729224 | TCCCTGAAGCAGTTCGGTCTG-GAGGTGAAGCAGTTCGGTCTG-GAGGTGAAGCAGTTCGGTCTG-GAGGTGAAGCAGTTCGGTCTG-GAGGTGAAGCAGTTCGGTCTG-GAGGTGAAGCAGTTCGGTCTG | Design primers |
| 3729351 | AGGTGAACCAGTTTGGTCTGG-AGGTGAAGCAGTTCGGTCTGG-AGGTGAAGCAGTTCGGTCTGG-AGGTGAAGCAGTTCGGTCTGG-AGGTGAAGCAGTTCGGTCTGG-AGGTGAAGCAGTTCGGTCTGG-AGGTGAAGCAGTTTGGTCTGG-AGGTGAACCAGTTCGGTCTGG-GGGTGAACCAGTTTGGTCTGG-AGGTGAAGCAGTTCGGTCTGG-AGGTGAACCATTTCGGTCTGG-GGGTGAACCAGTTCGGTCTGG-AGGTGAACCAGTTTGGTCTGG-AGGTGAACCAGTTCGGTCTGG-GGGTGAACCAGTTTGGTCTGG-AGGTGAAGCAGTTCGGTCTGG-AGGTGAACCATTTCGGTCTGG-GGGTGAACCAGTTCGGTCTGG-AGGTGAACCAGTTTGGTCTGG | Design primers |
| 3740828 | GCAAAAGTTCGGTTTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGT | Design primers |
| 3740892 | AACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTGGTTCGGTCTGGCGGTGAACTAGTTCGGTCTGGCGGTG | Design primers |
| 3773364 | AAGTTAGGTCTGGCGGTAAACTAGTTATGTCTGGAAGTAAACTAGTTATGTCTGGCGGTAAACTAGTTAGGTCTGGCGGTAAACTAGTTATGTCTGGGGGTAAACTAGTTATGTCTGGAGGTAAAC | Design primers |
| 3833773 | TTACCGAACTAGTTCACCTCCAGACCGAAGCAGTTCACCTCCAGACCGAAGCAGTTCACCTCCAGACCGAACTAGTTCACCTCCAGACCAAACTAGTTCAGCTCCAGACCAAACTAGTTCACCTCCAGACCAAACTAGTTCAGCTCCAGACCAAACTAGTTCAGCTCCAGACCAAACTAGTTCACCTCCAGACCAAACTAGTTTACCTCCAGACCAAACTAGTTCAGCTCC | Design primers |
| 3860969 | GTTGAAGTCCATCATATAGGTTATGGGAGTCCATTATATAGGTTGTGGAAGTCCATCGTATAGGTT | Design primers |
| 3900419 | AAAAAG-AAAAAG-AAGAAG-AAAAAA | Design primers |
| 3927139 | GGGCCTGCGGGCCTTCGGCCCTGC | Design primers |
| 3967374 | GGCGGTGGCGGAGGTGGTGGCGGA | Design primers |
| 4065547 | AGAAAGCTCCAGAAAAGAAAGCTATAGAAAGGAAAGCTATAGAAA | Design primers |
|
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