Microsatellites /Tandem Repeats database

Genome: Enterococcus faecalis OG1RF

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
64661GCCGAAACCAGATCCAAAACCAGA-TCCGAAACCAGATCCAAAACCAGA-TCCAAAACCAGACCCGAAACCAGADesign primers
114624AAAAAAAGAAGAAAAACAAAAAACADesign primers
204792ACGTGGCGG-ACGTGGCGG-ACGTCGCGGDesign primers
399524CTTTTTTTGCATTGTTTTGCATTTATTTGCDesign primers
439288AGAGTCGCTTGTTTTGGTATCGCTTGTTTTAGAATCACTTGATTTDesign primers
473854GTCAAAAACATTCAAAAAAATTAAAAAACADesign primers
504228TT-TT-TT-TG-TT-TA-TT-TT-TT-TG-TC-TT-TDesign primers
572647AATAAGTTAATATGTTAACAAGTTDesign primers
608628TA-AA-AA-TT-AA-AA-TA-TA-AA-TA-TA-AADesign primers
646004CAAAA-CAAAG-CCAAA-CCAAA-CAAAADesign primers
745886AGTGGTAGAAAGTGGTGGGATGTGGTAGACDesign primers
796146AAAAGA-TCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAA-CCAAAADesign primers
879052TAATTGTTGTAATTTTTGTAATTTTTGDesign primers
964269GATGATGAAGAAGATGAAGATGAAGAADesign primers
964391TGATGACGATGATGTTGAAGATGADesign primers
1000708TCAAATAAAAACAAGGTATAATAAAAACAAGGTATAATAAAAACTAGGDesign primers
1087105GT-GA-AA-AA-AT-GA-AA-AA-GA-GA-AA-AADesign primers
1145280TT-TT-AT-TG-TT-AT-AT-TT-AT-TT-TT-ATDesign primers
1302508TAGAGGAAACAACAGAAGAAACAACAGAAGAAACAADesign primers
1323610ACA-ACA-ACA-GCA-ACA-GCA-ACA-ACADesign primers
1468855TT-TT-TT-TC-TT-TT-TC-TT-CT-TT-TT-GT-TT-TT-CTDesign primers
1512154AAT-AAC-AAC-AAC-AAT-AAC-AAT-AAA-AAC-AACDesign primers
1621706ATATCCTCTTCAGTTATATCGTTTTCAGTTACATCGTCCTCAGTTDesign primers
1655285TTTTTTTGTTCTTTTTTTGTTTTTTCTTTTTTTTCDesign primers
1668574CAAAATAAAAAAATAACAAAAAAADesign primers
1689172ATTATTTTGTTTTATTATTTTTTTATATAATGTTGTTTTDesign primers
1712440GT-TT-CT-TT-TT-TT-CT-TT-GT-TT-GT-TTDesign primers
2035454ATTGGTATTGGCATTGCTTTTGGTDesign primers
2128253TT-TT-TG-TT-TT-TA-TG-TT-TT-TT-TC-TTDesign primers
2134096ATAAA-ATGAA-ATAAA-ATATA-ATTAADesign primers
2144539TTTTTTATTTATTTTTTTTGTTTTCDesign primers
2167924TT-TT-TT-TT-AT-TT-AT-TT-TT-TT-GT-TT-TDesign primers
2306807CATGATTTTTCGTCATTTTTTTTGATTTTTDesign primers
2538845CGTCATCGTAATCGTCATCATCATDesign primers
2545143TCTTACTTTTTTCTTCTTTTTTTCTTACTTTTTDesign primers
2620007TTTTTCAATTTTATCAATTTCTTCAATDesign primers

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