Microsatellites /Tandem Repeats database

Genome: Alteromonas macleodii Deep ecotype

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
407848AGCGCTTGAGT-GGCGCTTGAGT-GGCGCTTAAGTDesign primers
563614TCCTTTTAAGCGTCTTTTTAGGCGTCTTTTTAAGCGDesign primers
590034TGGTATGCTTGGTATGCATGGTACGCTDesign primers
684022CCTTAATAATTAAGCGACCATGATAATTAAGTGACCATAATCATTAAACGADesign primers
722381CTGCTGCAGCTGCTGTTGCTGTTGDesign primers
854050TTGTGCTCTTCGAGTCTGCTCTTCGAGTCTGCTCTTCGADesign primers
966630ACACTTG-CCCCTTG-CCCCTTG-CCCCTTG-CCCCTTG-CCCCTTGDesign primers
1005551AGAAGCTGAAGAAGAAGCAGTAGAAGCAACTGAAGADesign primers
1113282AGCTAA-CGCTAA-CGCTAA-CGCTAA-CGCTAADesign primers
1169798AACAGCCCTGAGCCGATT-AACAGCCCTGAGCCGATT-AACAGCCCTGAGCTAAGT-AACAGCCCTGAGCTAAGT-AACAGTCCTGAACCCATTDesign primers
1180012AAGAAGAAGCAGAAAAAGAAGTAGDesign primers
1191832ATAGAACGGTAAATAGAGCGGTAAGTAGAACGATAADesign primers
1278380GCGCTAC-TTGCTAC-TTGCTAC-TTGCTAC-TTGCTAC-TTGCTACDesign primers
1285969GAAGAGCCTTTAGCGGAAAAACAGCCTTTAGCGGAAAAACAGCCTTCAGCGGAADesign primers
1312420GGTGACACAGGT-GGTGATACCGGT-GGTGATACCGGT-GGTGACACAGGT-GGTGATACCGGT-GGTGACACAGGTDesign primers
1313044GACCCAACCTACCCAACCGACCCAACGDesign primers
1320090GGTGATGACGGTGAAGACGGTGAAGACDesign primers
1320125AGGCGCTCAAGGCCCAGTAGGTGAGCAAGGCCCAGTAGGCGAACAAGGTCCAGTAGGCGAACAAGGCCCAGADesign primers
1355353AAGCGAAAACGAAAGCGAAAGCGADesign primers
1413629TGGCAACGGTAACGGCAAGGGTAACGGCAAGGGTAADesign primers
1442797AAAAGCAGGCAAAAACAGGCTATAGCAGGCDesign primers
1502445GTAATGGTAAGGGTAACGGTACTGDesign primers
1600978TTGATGTTGAAGTTGAAGTAGATGDesign primers
1648906TAGACCAACAAAT-TAGACCAACAAAT-TAAACCAATAAATDesign primers
1651303GGAAATACGGTAAAAAATACGGTAGAAAATACGGCADesign primers
1855674GATGAA-GATGAA-GACGAA-GAAGAADesign primers
1951157GCGACGACAACAGACGACAAACGACGTCAADesign primers
2101865CAATACGAATACCAAAACCAAAACDesign primers
2106287TACACACTT-TACACACTT-TACACATTTDesign primers
2217278GGCACCTAATAGGAAATACTACTGAACTAATAGGAAATACTACTGAACTAATAGGAAATACTADesign primers
2244113TTTGCACTATTTGCACTTTTTGCAGTADesign primers
2273001ATACGGTAAAAGACACGGTAACAGATACGGTGAAAGDesign primers
2385364TTC-TTT-TTC-TTC-TTT-TTG-TTG-TTT-TTCDesign primers
2698840TTTGCTTTTGTTTTTTCTTCTGCTDesign primers
2724885CTCTAACGTTAACGGTTTTTTCTCACGTTAAAGGTTTTCTCTATCGTTAAAGGTTTCDesign primers
2760778TTTCCCTTTCTCTTTCACTTTCTCDesign primers
2763038TTGCTTCTCTCGTTAATGCATCTCTCGTAAATGCATCTCTCGTAADesign primers
2831538ACTGTTGAGCAAACAGTTGAGCAAACAGTTGAACAADesign primers
2889986TTAACTTA-CTGACTTG-CTGACTTG-CTGACTTG-CTGACTTG-CTGACTTGDesign primers
3055934GGATAATGC-CAATAGTGC-GGATAGTGC-GGATAGTGC-GGATAGTGC-GGATAGTGC-GGATAGTGC-GGATAGTGCDesign primers
3198213ATAACGCCT-TTAACGCCT-TTAACGCCTDesign primers
3708629ACCTGTATCGCCACCAGTATCGCCACCAGTATCACCACCAGTGTCGCCDesign primers
3817806CTTCCG-CTTGCG-CTTGCG-CTTTCGDesign primers
4008267GCGACTCGCTCAGGGCTG-CATACTCGCTCAGGGCTG-CATACTCGCTCAGGGCTGDesign primers
4072902ACAAAT-GAACAT-GAACAT-GAACAT-GAACAT-GAACAT-GAACAT-GAACAT-GAACATDesign primers
4212614AGCGGCTTTGGTTTTAAAAGGCTCTGGTTTTAAAAGGCTCTGGTTTTADesign primers
4222668CATGCCGCCCATTCCGCCCATGCCGCCDesign primers
4231337TACCCCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCT-ATTCGCTDesign primers
4339737CTGATGAGG-CTGATGAGG-CTGATAAGGDesign primers

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