Microsatellites /Tandem Repeats database

Genome: Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
48ATTTTTTATTTTTTTATTTTTTTADesign primers
9581TAATTTTTTTAAATTTTTTAAGTTTTTDesign primers
13633ATTTTTATTATTATTATTATTTTCDesign primers
26168ATATTTCTTTAATATTTTTTTTATTTTTCTCTADesign primers
41633TTTTTCTATTTCTTTTTTTTTGTCTTTTTGDesign primers
60560CTGCATCTTCATCTGTATCTGTATDesign primers
62694ATATAATTTTATAATTATAGAATTDesign primers
72010ATTTTTATTTATATTATTATTTTTDesign primers
121751AA-AA-AG-AA-CA-AG-AA-AA-AA-AA-AA-AADesign primers
121817AAAAAAAATCATATAAAATCAAAAATAAACDesign primers
161803CCACCAAAAATATCACCAAAAACATCCCCAAAAATADesign primers
172978TT-TT-TT-TT-AT-TT-TT-CT-TT-TT-AT-TT-TDesign primers
179619AAAATAATTTTTAAAATTTTTTTTATTATAATTTTTDesign primers
181878TAT-TAT-TAT-TTT-TTT-TAT-TAT-TATDesign primers
200905TTTTTTTATTTTTTCTATTTTTTCTDesign primers
211413TTTTTTTATAATTTTTTCTATTTCTTTATGDesign primers
215281AAATATAATTAAATATTTTTTTATATAATTDesign primers
232709TTTTTTATTTCTTTTTTTATTATTTTTTTADesign primers
238089TTTATTATATTTTTTTTTAGTTTTTDesign primers
281409ATATTTTTATAAATTTTTTTATTTTTTAATDesign primers
285425TT-TT-AT-TT-TT-TG-AT-TT-TT-CT-AT-TTDesign primers
287444AAATATTTTTTATTATTTTTATAAATTTTTDesign primers
294959AAACTAAAAAAGAAACAAAAGAAGAAAATAAAATAGDesign primers
309691AA-AA-AA-CA-AA-AA-GA-AA-AA-AA-TA-AA-ADesign primers
314130TTATTATATTAATATATTATTATADesign primers
337538AATAATAAAAATAATAATAATAAGDesign primers
353006ATTATGAATATGATTATGATTATGDesign primers
358153ATAAATTAAAATAACATAAAAAAAADesign primers
367100TATAGAATAAATATTCTATAATAAATATTATATAATAAATATTATATAATAAATAADesign primers
383247AATAAATAAAAATTAAAAAAATTAATTAAADesign primers
384683AATAATAAATATTATTATAAATATTATTATAAATATDesign primers
390584TTATT-ATATT-ATATT-TTATT-TTATTDesign primers
411097CGCTCGACC-TGCTCGACC-TGCTCGACCDesign primers
418782CT-CT-AT-TT-TT-TC-TA-TA-TT-TT-TT-AT-GT-AT-TT-TT-TDesign primers
426678ATTTTTATAAAATTTAATAATTTTTTACAADesign primers
429440AGATGGTGGAAATGGTGGAGATGGTGGDesign primers
435845AAAAAAAAATAAAATTAAAAAATAADesign primers
442110AA-AA-GA-AA-AA-CA-AG-AA-AA-AA-TA-GA-AA-ADesign primers
444187AAAAA-AAAAG-TAAAA-TAAAA-TAAAADesign primers
446199ATCAAATT-ATCAAATT-ATCAAAATDesign primers
470100AA-AA-AA-AA-AT-TA-AA-AA-AA-AT-AT-AA-ADesign primers
483539AAATTTATTAAAATCAATTATAAATTATTADesign primers
494914ATAAAAAAAAATAAGATAATATAATDesign primers
502752AAAAAAATAAATAAAAAAACAACAADesign primers
512932GT-TT-TA-TT-TT-GT-TT-TA-AT-AT-AT-TT-TT-TT-TTDesign primers
519919AGAAAAATAAAAAAATAAAAAAATDesign primers
526658AAAAAACAAATAAAACAAAAAAAATDesign primers
526943AAAATTAAAAAATTTAAAAATAAADesign primers
543732AAAATATTAAAAAAATATGAAAAAATTAGTAAADesign primers
561347TTATTAATATATTAATTTATTAAADesign primers
567964TTTTTTAAAAAATTTTTAAATATTTTTTTAAAADesign primers
608757TTTAAATAATTATAAATATTTTGAGATAATDesign primers
610633TATGAAAAAATATGAAAATCAATAAAAAAADesign primers
612829AA-TA-AA-AA-AA-CA-AA-AA-AA-TA-AA-AADesign primers
634118TTTTATTGTTTTATTATTTTTTTGDesign primers
640538TTTTTTGATATTTTCTTATATTTTTAGAAADesign primers

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